FIX: In dict serialization, dynamic variable and constraint update #31
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VER: 0.9 - RedGEM is Here! Thanks to a lot of work from @PtichapronRouge and @Redlinkk This release includes (finally!) a Python implementation of our redGEM[1] and lumpGEM[2] papers for systematic genome-scale metabolic model reduction. The code is still in development, so any feedback is welcome :) This version also features: * Repaired autodocumentation * Faster relaxation * Lots of code cleanup * Minor fixes [1] Ataman, Meric, et al. "redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models." PLoS computational biology 13.7 (2017): e1005444. https://doi.org/10.1371/journal.pcbi.1005444 [2] Ataman, Meric, and Vassily Hatzimanikatis. "lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites." PLoS computational biology 13.7 (2017): e1005513. https://doi.org/10.1371/journal.pcbi.1005513
Dev: Hotfix v 0.9.0-b1
* MNT: Pypi details * MNT: Adding veriable creation logs * FIX: typo * FIX: Issue EPFL-LCSB#28, incorrect variable referencing * TST: adding tests for some of the analysis functions * FIX: more fixes from EPFL-LCSB#28 * FIX: fixed transport reaction function * TST: Better tests, with a smaller model for I/O * TST/FIX: relative<- absolute paths for small_model resources * FIX: typo in paths to small_model resources for tests * VER: Bump v0.9.0-b2
Merge master
Mrg: Dev
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