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add "permafrost" soil #149

add "permafrost" soil

add "permafrost" soil #149

Workflow file for this run

name: Create new pull request
on:
workflow_dispatch:
issues:
types: [opened, edited]
issue_comment:
types: [created, edited]
jobs:
check:
runs-on: ubuntu-latest
outputs:
phraseExists: ${{ steps.check-body.outputs.phraseExists }}
commentId: ${{ steps.check-body.outputs.commentId }}
steps:
- name: Check if issue body or any comment contains 'Hey ontobot'
id: check-body
uses: actions/github-script@v7
with:
script: |
const issue = await github.rest.issues.get({
owner: context.repo.owner,
repo: context.repo.repo,
issue_number: context.issue.number
});
let bodyText = issue.data.body ? issue.data.body.toLowerCase() : '';
let commentId = null;
// Fetch all comments for the issue
const comments = await github.rest.issues.listComments({
owner: context.repo.owner,
repo: context.repo.repo,
issue_number: context.issue.number
});
// Function to check for the phrase in bodyText and comments
function checkForPhrase(bodyText, comments) {
const regex = /hey\s*[^a-zA-Z0-9]*\s*ontobot/i;
// Check if bodyText includes the phrase
let result = regex.test(bodyText);
// If not found in bodyText, check in comments
if (!result && comments) {
for (const comment of comments) {
if (regex.test(comment.body)) {
result = true;
break;
}
}
}
return result;
}
// Check each comment
let result = false;
for (let comment of comments.data.reverse()) { // Reverse to give precedence to the latest comment
if (comment.body.toLowerCase().includes('hey ontobot')) {
result = true;
commentId = comment.id;
break;
}
}
const checkResult = checkForPhrase(bodyText, comments.data);
console.log(`Result: ${checkResult}`);
console.log(`Comment ID: ${commentId}`);
core.setOutput('phraseExists', checkResult);
core.setOutput('commentId', commentId);
- name: Log phraseExists output
run: |
echo "phraseExists: ${{ steps.check-body.outputs.phraseExists }}"
echo "commentId: ${{ steps.check-body.outputs.commentId }}"
echo "Outputs: $(echo '${{ toJSON(steps.check-body.outputs) }}')"
- name: Conditional step based on result
if: ${{ steps.check-body.outputs.phraseExists == 'true' }}
run: echo "The phrase 'Hey ontobot' was found."
build:
needs: check
if: ${{ needs.check.outputs.phraseExists == 'true' }}
runs-on: ${{ matrix.os }}
container: obolibrary/odkfull:v1.4.3
strategy:
matrix:
python-version: ["3.9"]
os: [ubuntu-latest]
steps:
- name: Verify the value of phraseExists
run: |
echo "phraseExists = ${{ needs.check.outputs.phraseExists }}"
- name: Checkout main branch
uses: actions/checkout@v3
- name: Return issue number
id: gh-script-issue
uses: actions/github-script@v7
with:
script: |
const issue_number = context.issue.number;
return issue_number;
- name: Return repository name
id: gh-script-repo
uses: actions/github-script@v7
with:
script: |
const repo = context.repo.owner + "/" + context.repo.repo;
return repo;
- name: Set branch name
id: vars
run: |
echo "resource=src/envo/envo-edit.owl" >> $GITHUB_ENV
echo "branch-name=kgcl_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV
echo "comment-id=${{ needs.check.outputs.commentId }}" >> $GITHUB_ENV
- name: Get jar & enable plugin.
run: |
mkdir -p robot-plugins
wget https://github.com/gouttegd/kgcl-java/releases/download/kgcl-java-0.4.0/kgcl-robot-plugin-0.4.0.jar -O robot-plugins/kgcl.jar
echo "ROBOT_PLUGINS_DIRECTORY=$(pwd)/robot-plugins/" >> "$GITHUB_ENV"
- name: Install dependencies
run: |
pip install ontobot-change-agent
- name: Run ochange with comment-id
if: ${{ env.comment-id != '' }}
id: ochange_with_comment
run: |
ochange process-issue ${{ env.resource }} \
-r ${{ steps.gh-script-repo.outputs.result }} \
-n ${{ steps.gh-script-issue.outputs.result }} \
-g ${{ secrets.GH_TOKEN }} \
-c ${{ env.comment-id }}
- name: Run ochange without comment-id
if: ${{ env.comment-id == '' }}
id: ochange_without_comment
run: |
ochange process-issue ${{ env.resource }} \
-r ${{ steps.gh-script-repo.outputs.result }} \
-n ${{ steps.gh-script-issue.outputs.result }} \
-g ${{ secrets.GH_TOKEN }}
- name: Clean-up
run: rm -rf robot-plugins
- name: Create Pull Request
uses: peter-evans/create-pull-request@v5
if: ${{ env.PR_TITLE }}
with:
# token: ${{ secrets.GH_TOKEN }}
branch-suffix: short-commit-hash
labels: Automated
author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
body: ${{ env.PR_BODY }}
title: ${{ env.PR_TITLE }}
base: ${{ github.head_ref }}
branch: ${{ env.branch-name }}