Doc string improvement #2839
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Doc string improvement #2839
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garth-wells
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Oct 30, 2023
* Improve comment (#2839) * Use `pyproject.toml` for install of Python part (#2707) * Try using pyproject * fixup pip command * Find python * debug * Try by adding path explicitly * Try no build isolation on mac. * Try this on macos. * Update CI * Typo * Fix. * Should be dependency of scikit-build-core. * Attempt fix for ubuntu. * Fix? * Add pyproject variant * Typo. * Explicit python intepreter. * Try forcing x86-64 arch. * Try this ordering. * Upgrade pip etc. * And on mac. * This works locally on my macOS system. pip install --no-build-isolation is required. * Works locally, not totally happy with the RPATH stuff. * Tidy. * Fix circleci * Tidy. * Update minimum pybind11. * Don't think these belong here. * Change email. * Tweaks to Dockerfiles and workflows. * Update macos workflow * Typo * Fix. * Get cmake to set rpath automatically. * Don't understand why but doesn't run on circleci, try this. * Typo * Tweak. * Update macos.yml * Try removing. * Exclude .cpp files as suggested. * Add --check-build-dependencies * Not necessary, think this is well known now. * Fix typo no install. * Update build-requirements.txt * Update pyproject.toml --------- Co-authored-by: Jack S. Hale <mail@jackhale.co.uk> Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk> * Update config * Small updates --------- Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk> Co-authored-by: Jack S. Hale <mail@jackhale.co.uk>
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Nov 3, 2023
* First try to use nanobind with dolfinx [skip ci] * Fix pack coefficients [skip ci] * Disable petsc for now * Small fixes [skip ci] * Fix graph and geometry * Update to main * Get a few tests working * More fixes * remove duplicate line * hack dtype * updates * update for numpy_dtype * Install nanobind in CI * Install in right place * Fix one test * Fix a few issues * Fix complex dtype * Enable some PETSc * Some bits and pieces * More fixes * Enable more PETSc * Some fixes * Fix more failing tests * Get some cppimport working * More fixes * Get bindings to compile * Change nanobind install * CI updates * Updates * Update * Fix cast * Get building working * Updates * Update * Change linking * Get elasticity demo working * Tidy * Enable Constant value * Fix * Constants fix * IO fix * Limit tests * Disable doc tests * Add missing include * Fixes * Updates * Update demo * Comment out part of demo * Constrain array * Disable more code * Improvements * Disable MPI Python unit tests * IO update * flake8 fix * Disable some tests * flake8 fixes * Syntax fix * range fix * Get bbox working * Simplify * Fix test * Fix numba test * Fixes * Fix * Fix * Update demo * mypy fix * Demo fix * Disable doc ci * Parallel fix * reduce output * Relax doc generation * Enable more tests * Improvements * Fix * Improvement * Adj list fix * Try shared linking * Disable MPI/cppimport test * Simplify * Small fixes * Remove shared lib nanobind * Improve formatting * Include nanobind complex header * Run CI with complex * Type change * Work-around for possible bug in nanobind. nanobind seems to reject read-only complex Numpy arrays (real case is fine) * Bug fixes * Some work-arounds * Disable complex tests * Disable oneapi tests * flake8 fix * Enable complex test * Updates * Real tests only * Switch to writeable arrays * Enable some tests * Small update * Logic fix * Fixes * Get complex test passing * Enable more CI test images * oneAPI parallel tests * Use read-only PETSc Numpy arrays and use nanobind dev version (#2825) * Use read-only PETSc Numpy arrays and use nanobind dev version. * Demo fix * Install nanobind on CircleCI * Fix * Array improvements (nanobind) (#2827) * Simplify * Small fix * Simplify * Skip test * Simplifications * Small fix * Array shape improvements * Fixes * Revert to static nanobind lib * [nanobind] improve wrapping by ndarray (#2829) * Updates * Updates * Simplify * Small fix * flake8 fixes * Fixes * Small tidy up * Improvements (#2830) * [nanobind] array improvements (#2832) * Fix some arrays * Updates * Fix * Update * Simplifications * Improvements * Syntax improvements * Updates * Uncomment test body * Uncomment test * Disable test * [nanobind] improve casters (#2837) * Simplify moving data into arrays * More simplifying * Cast improvements * Work on casters * Fix casters * Remove test function * Tidy up * Type and formatting fix * Manage lifetime * Remove header * Remove print statements * Memory fix * Lifetime management fixes * Updates * Fix MPI * Fix call * Small updates * Work-around * Formatting fix * Work-around in casters * Add function to copy nanobind arrays * Remove a few more occurences of pybind11 (#2834) * [nanobind] merge pyproject change from main (#2840) * Improve comment (#2839) * Use `pyproject.toml` for install of Python part (#2707) * Try using pyproject * fixup pip command * Find python * debug * Try by adding path explicitly * Try no build isolation on mac. * Try this on macos. * Update CI * Typo * Fix. * Should be dependency of scikit-build-core. * Attempt fix for ubuntu. * Fix? * Add pyproject variant * Typo. * Explicit python intepreter. * Try forcing x86-64 arch. * Try this ordering. * Upgrade pip etc. * And on mac. * This works locally on my macOS system. pip install --no-build-isolation is required. * Works locally, not totally happy with the RPATH stuff. * Tidy. * Fix circleci * Tidy. * Update minimum pybind11. * Don't think these belong here. * Change email. * Tweaks to Dockerfiles and workflows. * Update macos workflow * Typo * Fix. * Get cmake to set rpath automatically. * Don't understand why but doesn't run on circleci, try this. * Typo * Tweak. * Update macos.yml * Try removing. * Exclude .cpp files as suggested. * Add --check-build-dependencies * Not necessary, think this is well known now. * Fix typo no install. * Update build-requirements.txt * Update pyproject.toml --------- Co-authored-by: Jack S. Hale <mail@jackhale.co.uk> Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk> * Update config * Small updates --------- Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk> Co-authored-by: Jack S. Hale <mail@jackhale.co.uk> * Small edits * Enable test output * Move nanobind install to top for oneapi * oneapi update * Install scikit-build-core * Move steps in CI * Reduce test size * [nanobind] set to nanobind dev version in requirements (#2841) * Put git nanobind in requirements * Fix typo * Reinstate more oneapi tests * Tidy up * Revert mesh partition change * Remove test that isn't helpful * flake8 fix * Add skip for @entries in nanobind * Revert * Add back sphinx -W and try new version * Set nanobind version * Re-enable a float32 test * Fix CI * Simplify * Undo demo change * Re-enable partiton code. (#2859) * Add missing include * Disable nanobind leak messages in release mode * Run all oneAPI tests * Misc fixes and tidying * Remove cppimport examples * Replace std::vector with nb::ndarray * Array cast fix * Updates --------- Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk> Co-authored-by: Francesco Ballarin <francesco.ballarin@unicatt.it> Co-authored-by: Jack S. Hale <mail@jackhale.co.uk> Co-authored-by: Chris Richardson <cnr12@cam.ac.uk>
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