Skip to content

Commit

Permalink
Merge pull request #399 from mpsonntag/cl_script_tests
Browse files Browse the repository at this point in the history 
Command line script tests

LGTM
  • Loading branch information
@achilleas-k
achilleas-k authored Jun 25, 2020
2 parents a231956 + d7086a6 commit 7a1ca1f
Show file tree
Hide file tree
Showing 15 changed files with 1,783 additions and 0 deletions.
122 changes: 122 additions & 0 deletions test/resources/scripts/odml_convert/conversion_example_A.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,122 @@
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
<odML version="1">
<section>
<property>
<value>0.0<unit>um</unit></value>
<name>Depth</name>
</property>
<property>
<value>P-unit</value>
<name>CellType</name>
</property>
<property>
<value>Nerve</value>
<name>Structure</name>
</property>
<property>
<value>0.1</value>
<name>CV</name>
</property>
<property>
<value>12.8<unit>Hz</unit></value>
<name>Baseline rate</name>
</property>
<name>Cell</name>
<type>Cell</type>
</section>
<section>
<property>
<value>weak response</value>
<name>Comment</name>
</property>
<property>
<value>2020-06-24-ab</value>
<name>Name</name>
</property>
<property>
<value>Good</value>
<name>Recording quality</name>
</property>
<property>
<value>12.8.7 (20/06/24)</value>
<name>Software version</name>
</property>
<property>
<value>Ex Perimenter</value>
<name>Experimenter</name>
</property>
<property>
<value>Acquisition</value>
<name>Mode</name>
</property>
<property>
<value>conversion_example.xml</value>
<name>File</name>
</property>
<property>
<value>16:35:51</value>
<name>Time</name>
</property>
<property>
<value>2020-06-24</value>
<name>Date</name>
</property>
<property>
<value>100<unit>m</unit></value>
<name>Recording duration</name>
</property>
<property>
<value>./odml_convert</value>
<name>Folder</name>
</property>
<property>
<value>SomeEphysSoftware</value>
<name>Software</name>
</property>
<name>Recording</name>
<type>Recording</type>
</section>
<section>
<property>
<value>12.0<unit>Hz</unit></value>
<name>Firing Rate1</name>
</property>
<property>
<value>12.0<unit>Hz</unit></value>
<name>EOD Frequency</name>
</property>
<property>
<value>0.1</value>
<name>P-Value1</name>
</property>
<name>Cell properties</name>
<type>Cell properties</type>
</section>
<section>
<property>
<value>unknown</value>
<name>Gender</name>
</property>
<property>
<value>Xen Omorph</value>
<name>Species</name>
</property>
<property>
<value>10.0<unit>cm</unit></value>
<name>Size</name>
</property>
<property>
<value>1.0<unit>mV</unit></value>
<name>Transdermal amplitude</name>
</property>
<property>
<value>1.4<unit>Hz</unit></value>
<name>EOD Frequency</name>
</property>
<name>Subject</name>
<type>Subject</type>
</section>
<author>tester</author>
</odML>
122 changes: 122 additions & 0 deletions test/resources/scripts/odml_convert/conversion_example_B.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,122 @@
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
<odML version="1">
<section>
<property>
<value>0.0<unit>um</unit></value>
<name>Depth</name>
</property>
<property>
<value>P-unit</value>
<name>CellType</name>
</property>
<property>
<value>Nerve</value>
<name>Structure</name>
</property>
<property>
<value>0.1</value>
<name>CV</name>
</property>
<property>
<value>12.8<unit>Hz</unit></value>
<name>Baseline rate</name>
</property>
<name>Cell</name>
<type>Cell</type>
</section>
<section>
<property>
<value>weak response</value>
<name>Comment</name>
</property>
<property>
<value>2020-06-24-ab</value>
<name>Name</name>
</property>
<property>
<value>Good</value>
<name>Recording quality</name>
</property>
<property>
<value>12.8.7 (20/06/24)</value>
<name>Software version</name>
</property>
<property>
<value>Ex Perimenter</value>
<name>Experimenter</name>
</property>
<property>
<value>Acquisition</value>
<name>Mode</name>
</property>
<property>
<value>conversion_example.xml</value>
<name>File</name>
</property>
<property>
<value>16:35:51</value>
<name>Time</name>
</property>
<property>
<value>2020-06-24</value>
<name>Date</name>
</property>
<property>
<value>100<unit>m</unit></value>
<name>Recording duration</name>
</property>
<property>
<value>./odml_convert</value>
<name>Folder</name>
</property>
<property>
<value>SomeEphysSoftware</value>
<name>Software</name>
</property>
<name>Recording</name>
<type>Recording</type>
</section>
<section>
<property>
<value>12.0<unit>Hz</unit></value>
<name>Firing Rate1</name>
</property>
<property>
<value>12.0<unit>Hz</unit></value>
<name>EOD Frequency</name>
</property>
<property>
<value>0.1</value>
<name>P-Value1</name>
</property>
<name>Cell properties</name>
<type>Cell properties</type>
</section>
<section>
<property>
<value>unknown</value>
<name>Gender</name>
</property>
<property>
<value>Xen Omorph</value>
<name>Species</name>
</property>
<property>
<value>10.0<unit>cm</unit></value>
<name>Size</name>
</property>
<property>
<value>1.0<unit>mV</unit></value>
<name>Transdermal amplitude</name>
</property>
<property>
<value>1.4<unit>Hz</unit></value>
<name>EOD Frequency</name>
</property>
<name>Subject</name>
<type>Subject</type>
</section>
<author>tester</author>
</odML>
Empty file added test/resources/scripts/odml_convert/test_broken/empty.xml
View file
Empty file.
13 changes: 13 additions & 0 deletions test/resources/scripts/odml_convert/test_broken/invalid_xml.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
<?xml version="1.0" encoding="ISO-8859-1"?>
<?xml-stylesheet type="text/xsl" href="odml.xsl" xmlns:odml="http://www.g-node.org/odml"?>
<odML version="1">
<repository>http://portal.g-node.org/odml/terminologies/v1.0/terminologies.xml</repository>
<section>
<type>Recording</type>
<name>Recording-some-date-ah</name>
<property>
<name>Temperature</name>
<value>24<type>float</type><unit><B0>C</unit></value>
</property>
</section>
</odML>
30 changes: 30 additions & 0 deletions test/resources/scripts/odml_convert/test_recursive/conversion_example_sub_root.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
<odML version="1">
<section>
<property>
<value>0.0<unit>um</unit></value>
<name>Depth</name>
</property>
<property>
<value>P-unit</value>
<name>CellType</name>
</property>
<property>
<value>Nerve</value>
<name>Structure</name>
</property>
<property>
<value>0.1</value>
<name>CV</name>
</property>
<property>
<value>12.8<unit>Hz</unit></value>
<name>Baseline rate</name>
</property>
<name>Cell</name>
<type>Cell</type>
</section>
<author>tester</author>
</odML>
30 changes: 30 additions & 0 deletions test/resources/scripts/odml_convert/test_recursive/sub/conversion_example_sub_sub.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
<odML version="1">
<section>
<property>
<value>0.0<unit>um</unit></value>
<name>Depth</name>
</property>
<property>
<value>P-unit</value>
<name>CellType</name>
</property>
<property>
<value>Nerve</value>
<name>Structure</name>
</property>
<property>
<value>0.1</value>
<name>CV</name>
</property>
<property>
<value>12.8<unit>Hz</unit></value>
<name>Baseline rate</name>
</property>
<name>Cell</name>
<type>Cell</type>
</section>
<author>tester</author>
</odML>
Loading

0 comments on commit 7a1ca1f

Please # to comment.