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@GavinHaLab

GavinHaLab

Cancer Genomics and Computational Biology Lab at Fred Hutch

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  1. ichorCNA ichorCNA Public

    Forked from broadinstitute/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    R 15 10

  2. Griffin Griffin Public

    Forked from adoebley/Griffin

    A flexible framework for nucleosome profiling of cell-free DNA

    Python 7 4

  3. TitanCNA_SV_WGS TitanCNA_SV_WGS Public

    R 1 1

  4. PEARL PEARL Public

    Jupyter Notebook 1

  5. Keraon Keraon Public

    Forked from denniepatton/Keraon

    A tool for estimating heterogenous phenotype fractions from ctDNA features

    Python 1

Repositories

Showing 10 of 30 repositories
  • ichorCurate Public Forked from ajnetzley/ichorCurate

    A solution curation application to supplement ichorCNA

    GavinHaLab/ichorCurate’s past year of commit activity
    Python 0 2 0 0 Updated Mar 19, 2025
  • GavinHaLab.github.io Public

    Gavin Ha Lab Website

    GavinHaLab/GavinHaLab.github.io’s past year of commit activity
    JavaScript 1 0 0 3 Updated Mar 3, 2025
  • LNCaP-subline-paper Public

    Code, scripts, data for analyses presented in

    GavinHaLab/LNCaP-subline-paper’s past year of commit activity
    Python 0 0 0 0 Updated Feb 19, 2025
  • WDL-Pipelines Public

    A central repository for tools wrapped in WDL for the Ha lab.

    GavinHaLab/WDL-Pipelines’s past year of commit activity
    WDL 0 0 1 0 Updated Feb 1, 2025
  • ichorCNA_WDL Public

    Has Dockerfile and WDL pipeline for ichorCNA

    GavinHaLab/ichorCNA_WDL’s past year of commit activity
    WDL 1 BSD-3-Clause-Clear 0 0 0 Updated Jan 29, 2025
  • CRPCSubtypingPaper Public

    Analysis code used in ctDNA CRPC phenotype manuscript

    GavinHaLab/CRPCSubtypingPaper’s past year of commit activity
    Python 2 1 2 0 Updated Dec 6, 2024
  • ichorCNA Public Forked from broadinstitute/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    GavinHaLab/ichorCNA’s past year of commit activity
    R 15 GPL-3.0 89 11 0 Updated Nov 22, 2024
  • crpc-sv-pattern-study Public
    GavinHaLab/crpc-sv-pattern-study’s past year of commit activity
    R 2 3 0 0 Updated Nov 14, 2024
  • fastq_to_bam_paired_snakemake Public Forked from annahoge/fastq_to_bam_paired_snakemake

    A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.

    GavinHaLab/fastq_to_bam_paired_snakemake’s past year of commit activity
    Python 1 4 0 0 Updated Oct 3, 2024
  • PEARL Public
    GavinHaLab/PEARL’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 30, 2024
View all repositories

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