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ffs with recipe #8

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joshualerickson opened this issue Mar 10, 2020 · 0 comments
Open

ffs with recipe #8

joshualerickson opened this issue Mar 10, 2020 · 0 comments

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@joshualerickson
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When I try to use a recipe with ffs it doesn't recognize the "response" from the recipe object. Is there a work around for this? Thanks.

``
rec_test <-
recipe(stream ~ ., data = testing) %>%
update_role(sb12, new_role = "performance var") %>%
step_center(all_predictors()) %>%
step_scale(all_predictors()) %>%
step_pca(contains("_30agg"), prefix = "pca_B", threshold = 0.9)

sb12 <- CreateSpacetimeFolds(train,spacevar = "sb12",k = 10, seed = 123 )
ctrltest <- trainControl(method="repeatedcv",
repeats = 5,
allowParallel = TRUE,
returnResamp = "all",
verbose = FALSE,
index = sb12$index)

set.seed(1234)
ffstest <- ffs(rec_test,
data = testing,
metric = "Kappa",
method = "rf",
trControl = ctrltest)

Error in ffs(rec_test, data = testing, metric = "Kappa", method = "rf", :
argument "response" is missing, with no default

HannaMeyer pushed a commit that referenced this issue Feb 7, 2024
* implement quantitative density layer

* document parameter k

* comments

* just spaces to be in sync with qmd scripts

* change QD to LPD

* update validation and maxLPD derivation

* update plot and print (#2)

* add exploreAOA function (#3)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* Dev (#4)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Dev (#12)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* Dev (#13)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs

* Dev (#14)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs

* Dev (#15)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs
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