Increasing Pytest Coverage

Planning increasing Pytest coverage.

This page discusses proposals and plans to increase the coverage by Pytest.

Pytest structuring

• Separate out parser, logger and directory handling tests into separate test fills for easier navigation of test directory

get_ncbi_genomes.py

• Current coverage is 38%. Calling to Entrez to retrieve accession numbers and download GenBank files.
• Coverage could be increased by creating a pytest for the compile_url() function.
• write_out_dataframe() function is used in other modules and could be moved into the directory_handling module.

output_dir_handling.py

• Increase the coverage of testing make_output_directory() function by changing force and nodelete to True.
• Add test to test the write_out_dataframe() function

logger_pyrewton_main.py

• Increase coverage of main build_logger function by changing args.log to not equal None.