fix collectReads parameters

Illumina · Nov 14, 2019 · fd21ada · fd21ada
1 parent 2ac0d0b
commit fd21ada
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sample_analysis/HtsSeekingSampleAnalysis.cpp b/sample_analysis/HtsSeekingSampleAnalysis.cpp
@@ -165,7 +165,7 @@ SampleFindings htsSeekingSampleAnalysis(
     std::vector<RegionDepthInfo> normDepthInfo;
     for (RegionInfo regionInfo : normRegionInfo)
     {
-        ReadPairs readPairs = collectReads({ regionInfo.region }, HtsFileSeeker, mateExtractor);
+        ReadPairs readPairs = collectReads({ regionInfo.region }, htsFileSeeker, mateExtractor);
 
         for (const auto& fragmentIdAndReadPair : readPairs)
         {