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manta-0.25.0
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@ctsa ctsa released this 09 Jun 23:32
· 1005 commits to master since this release
v0.25.0
02fa446

This release primarily brings together some long-standing RNA and DNA logic forks. Split-read handling improvements from the RNA workflow should benefit DNA-Seq recall (esp for FFPE).

  • RNA
    • parameter adjustments, additional vcf output, orientation fixes
  • MANTA-187
    • treat split reads symmetrically to improve RNA fusion detection
    • detect split reads directly rather than via associated soft-clip sequence
    • exclude split reads from contributing to local assembly evidence
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