Finite Pencil Beam Kernel #11
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- Added FinitePencilBeamKernel.jl to src/ and test/ - Implemented profile functions with relevant tests - Added Project.toml for tests
- AbstractFluenceElement is the new supertype for Bixels and Beamlets - Added Beamlet struct and constructor from a bixel - Moved all concrete methods on AbstractBixel to Bixel
- Not yet fully implemented - Added methods for dose-fluence matrix computations
- Added two methods for constructing FinitePencilBeamKernels - From parameter and scaling factor arrays - From an HDF5 file - Added the calibrate! method, which scales the kernel
- Added beamlet position to Beamlet
- Can construct Beamlet from a Bixel and GantryPosition
- Fixed calibrate!(calc::FinitePencilBeamKernel...)
- Added Optim to find max. dose
- Added Beamlet version of dose_fluence_matrix! and dose_fluence_matrix
- Two versions of dose_fluence_matrix currently, for Bixel and for
Beamlet
- Added multi-threaded implementation of dose_fluence_matrix
- Fixed "batman" dose - Due to scaling issue in commisioning - Added linear extrapolation to fPBK interpolation - Added hard-coded axes directions sx and sy to point_dose for FPBK
- New methods fill_colptr!, fill_rowval! and dose_kernel! - Updated for fPBK
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Implements the Finite Pencil Beam Kernel (fPBK) dose calculation algorithm as described in Jelen et al. 2005.
Beamlettype for beamlets. These can be constructed using bixel and gantry positionsdose_fluence_matrix!fill_colptr!,fill_rowval!anddose_kernel!to be implementedBeamletScaledIsoplaneKernel