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PBPK Ontology

The PBPK (Physiologically-Based Pharmacokinetic) ontology is designed to support the modeling and understanding of pharmacokinetics in biological systems. This documentation provides an overview of the ontology development workflow, the imported ontologies, and the specific terms used in PBPK ontology.

NOTE: Detailed documentation of ontology can be found at this link

Development Workflow

The development of the PBPK ontology leverages the ROBOT (ROBOT is an OBO Tool) framework, which provides powerful tools for ontology development, including ontology merging, reasoning, and template-based term generation.

Imported Ontologies

  1. Uberon : A multi-species anatomy ontology covering anatomical structures in animals.

PBPK terms vocabulary

PBPK terms are available in ROBOT template

Contributors for developing PBPKO

IISPV: Shubh Sharma, Deepika Deepika, Saurav Kumar, Vikas Kumar
WUR: Johannes Kruisselbrink
JSI: Panče Panov

Contact and Support

For questions or support regarding the PBPK ontology, please open an issue in the GitHub repository or contact the maintainers directly.

Contact Person: IISPV: Saurav Kumar Shubh Sharma Deepika Deepika Vikas Kumar