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Running NGSeasy

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Stephen J Newhouse edited this page May 3, 2015 · 1 revision 
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## 0. Move to config file dir

cd /home/ec2-user/ngs_projects/config_files/

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## 1. Set up project and sample directories

ngseasy_initiate_project -c ngseasy_test.config.tsv -d /home/ec2-user/ngs_projects 

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## 2. Move project/sample fastq from raw_fastq
## to project and sample directories

ngseasy_initiate_fastq -c ngseasy_test.config.tsv -d /home/ec2-user/ngs_projects 

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## 3. Run basic test 

ngseasy -c ngseasy_test.config.tsv -d /home/ec2-user/ngs_projects
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