Dec 26, 2024
Important
Now, the end-to-end task allow to skip the PhaMer(virus identification).
If users already have the viral contigs as their inputs, they can run end-to-end task using --skip Y to skip the virus identification
However, please noted that the default parameters is --skip N
We also added a log output that tells the user that PhaMer detected no viruses and stopped the following pipelines in the end-to-end task in --skip N condition.