Skip to content

Commit

Permalink
Update README
Browse files Browse the repository at this point in the history
  • Loading branch information
LloydChapman committed Apr 5, 2023
1 parent b7e8536 commit b336a66
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -30,13 +30,13 @@ All data required to run the code are contained in the [data](data) folder and a

## Running the code

The odin model code is contained in [covid_multi_strain.R](inst/odin/covid_multi_strain.R). If required, the model can be modified by editing this code, and then recompiled by calling
The odin model code is contained in [inst/odin/covid_multi_strain.R](inst/odin/covid_multi_strain.R). If required, the model can be modified by editing this code, and then recompiled by calling
```R
odin_dust("inst/odin/covid_multi_strain.R")
```
as in [fit_covid_multi_strain.R](R/fit_covid_multi_strain.R).

The workflow is as follows. The model can be fit to the data for French Polynesia using the adaptive MCMC algorithm in [pmcmc.R](R/pmcmc.R) by running:
The workflow for fitting the model and running counterfactual simulations is as follows. The model can be fit to the data for French Polynesia using the adaptive MCMC algorithm in [pmcmc.R](R/pmcmc.R) by running:
```R
source("R/fit_FP.R")
```
Expand Down

0 comments on commit b336a66

Please # to comment.