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36 Open 86 Closed
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Issues list

RuntimeError with Shared Tensors in DNABERT-2-117M Configuration Using run_mlm.py
#130 opened Dec 22, 2024 by RobinLi7
Shapley plot
#126 opened Nov 9, 2024 by AnshulVerma01
finetune results seems not very stable
#125 opened Oct 29, 2024 by maris205
2
finetune error
#123 opened Oct 29, 2024 by maris205
1
readme for GUE datasets?
#120 opened Oct 17, 2024 by maris205
Logits and Labels are different shapes
#119 opened Oct 16, 2024 by SamuelTWu
Suggest better error message than 'assert q.is_cuda and k.is_cuda and v.is_cuda'
#112 opened Sep 9, 2024 by richelbilderbeek
2
How to use fine tuned model for prediction?
#111 opened Sep 1, 2024 by AnshulVerma01
1
Where are your Species Classification datasets?
#110 opened Aug 27, 2024 by andreyfsch
Is it possible to publish the detailed requirement file?
#107 opened Aug 11, 2024 by nettanetta
Is there a way to turn off the setting to use flash attention/triton library?
#104 opened Jul 27, 2024 by vivektreddy
3
GUE labels
#93 opened Jun 11, 2024 by nehmea
Unable to Retrieve ' hidden_states ' Despite ' Setting return_dict=True ' and ' output_hidden_states=True '
#85 opened May 7, 2024 by biglittleme
3
splice site predictions
#83 opened Apr 30, 2024 by amitpande74
How do I output the attention from the model?
#80 opened Apr 5, 2024 by jkb-ag
1
Fine-tune for continuous labels
#79 opened Apr 5, 2024 by buwanim
5
hidden_states = model(inputs)[0] # [1, sequence_length, 768]-- Is the second dimension really the sequence length?
#72 opened Mar 6, 2024 by xueleecs
1
When will the pretraining code be available?
#67 opened Feb 3, 2024 by chenwydj
2
Debug issue
#65 opened Jan 22, 2024 by jimmylihui
1
Wrong tokens at the end of the sequence
#63 opened Jan 10, 2024 by pabloacera
token split issue
#62 opened Dec 29, 2023 by HITzhongyu
"indexSelectLargeIndex: block: [313,0,0], thread: [32,0,0] Assertion srcIndex < srcSelectDimSize failed." after evaluation.
#61 opened Dec 23, 2023 by Time-Rune
Triton flash attention error
#57 opened Nov 16, 2023 by Atrix21
13
AssertionError: libcuda.so cannot found!
#56 opened Nov 11, 2023 by aaronmaiww
1
Inference fails with output_all_encoded_layers=True
#48 opened Oct 5, 2023 by princethewinner
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