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Postgres buildmimic scripts update for MIMIC-IV v2.0 #1328

Merged
merged 8 commits into from
Jul 7, 2022
Merged

Postgres buildmimic scripts update for MIMIC-IV v2.0 #1328

merged 8 commits into from
Jul 7, 2022

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alexmbennett2
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I updated the scripts to load MIMIC-IV v2.0 into Postgres. The main changes were:

  • Swapping out mimic_core for mimic_hosp
  • adding omr and ingredientevents
  • adding additional columns to pre-existing tables
  • removed columns if they had been dropped in this version of MIMIC-IV

Potential still to do

  • index and constraints for the two new tables omr and ingredientevents
    • left blank for now since not super clear to me what to put for the index/constraint

ghost
ghost suggested changes Jul 6, 2022
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From Line 195 on down you missed some mimic_core changes that have to be made.

@alistairewj alistairewj force-pushed the mimic_iv_postgres_create_updatev2 branch from 18034f7 to f67e5f0 Compare July 7, 2022 12:39
@alistairewj alistairewj merged commit 15ab4a2 into MIT-LCP:main Jul 7, 2022
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@alexmbennett2 @alistairewj