Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Include postgres MIMIC-III concepts #1448

Merged
merged 12 commits into from
Dec 9, 2022
Merged

Conversation

alistairewj
Copy link
Member

There were a few scripts that weren't working in the MIMIC-III folder. This PR:

  1. Adds a shell script which converts BigQuery syntax to PostgreSQL syntax, and outputs a postgres-make-concepts.sql script (this is the approach taken by MIMIC-IV)
  2. Adds the postgres concepts to the repo (some of them are not automatically generated, which fixes bugs which have been raised to me outside this repo)
  3. Fixes other misc bugs with the concept scripts I found

I tested the postgres-make-concepts.sql script and all the concepts build in postgres v14.

@alistairewj alistairewj merged commit 1ff562b into main Dec 9, 2022
@alistairewj alistairewj deleted the mimiciii_postgres_concepts branch December 9, 2022 15:05
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants