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MIMIC Code v2.0.0
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@alistairewj alistairewj released this 07 Dec 22:01
· 631 commits to main since this release
v2.0.0
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Learn about vigilant mode.

This is the first release with the new repository organization where all MIMIC related code is located here, including MIMIC-III, MIMIC-IV, MIMIC-IV-ED, and MIMIC-CXR. Many thanks to @briangow for so much effort in doing this reorganization!

Change log:

  • A GitHub action workflow now regenerates BigQuery tables for MIMIC-IV upon publish of a release, ensuring BigQuery is synchronized with the latest release of the code.
  • Added MIMIC-IV and MIMIC-IV-ED build scripts.
  • Added MIMIC-IV and MIMIC-IV-ED concepts.
  • Added code for parsing MIMIC-CXR DICOMs (dcm) and deidentified free-text reports (txt) - this is the mimic-iv-cxr subfolder here (the mimic-iv prefix helps clarify this data can be used with MIMIC-IV - i.e. mimic-iv-cxr is synonymous with MIMIC-CXR).
  • Added version of MIMIC-IV concepts in the PostgreSQL dialect. These concepts are (mostly) automatically generated using a shell script from the BigQuery syntax.
  • Various bug fixes for MIMIC concepts.

Contributors

briangow
Assets 2
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