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Cyclical graphs support #550

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@pgleeson pgleeson commented May 8, 2025

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pgleeson and others added 30 commits November 21, 2022 18:23
* nml_examples:
  Improved plotting of iaf output
* development:
  Pin to psyneulink==0.12.1.0; issues with pnl 0.13 forcing pytorch 1.13...
  Add link to sphinx
  added additional information to condition's readme file
  Tweaks to install/generate documentation readme
  adding more infomation to conditions readme files
  additional changes to generate mdf documentation offline
  additional updates to generating mdf documentation offline
  added updates to installation.md
  test with python 3.11
  documentation on how to generate MDF documents offline
  documentation on how to generate MDF documents offline
  more modifications of contributors page
  the initial commit for the contributors page was scattered, this is the proper commit
  modified add contributor's page
  Fix formatting
  Create README.md
  add contributors page to documentation
* development:
  Intro regenerated
  Minor updates
  Added few links as references to some topics
  small changes to the images
  image resize
  Revert func spec
  small image changes
  Update README.md
docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
docs/sphinx/source/api/export_format/PyTorch/simple_pytorch_to_mdf.png
docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
docs/sphinx/source/api/export_format/NeuroML/IzhikevichTest.gv.png
Latest development to cyclic graphs test branch
* development: (24 commits)
  Regenerated mnist
  Update precommit action
  Re-enable tensorflow tests on 3.11
  Add support for softmax_v2 activation function.
  Get rid of serialization entirely.
  Re-exclude keras_model.py again.
  Un-exclude keras_model.
  Exclude keras_model.py from running as separate example
  Run pre-commit
  Skipping brew update on macos
  Add keras model files to gitignore.
  Rerun to update keras model PNG, JSON, and YAML.
  Change to new keras model format.
  Delete keras model files from repo, these are generated by the scripts.
  Skipping brew update on macos
  Make sure ONNX ops are run with opset bigger than 7.
  Update actions/upload-artifact@v4
  Update setup graphviz action
  import os error
  added import os in examples/MDF/simple.py
  ...
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