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GPU poa implementation trims windows when using short reads with coverage greater than 200 #1

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rvaser opened this issue Jun 19, 2019 · 0 comments
Open

GPU poa implementation trims windows when using short reads with coverage greater than 200 #1

rvaser opened this issue Jun 19, 2019 · 0 comments
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enhancement New feature or request

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@rvaser
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rvaser commented Jun 19, 2019

Data provided via email. I have run the following commands:

minimap2 -t 8 -x sr assembly.fasta reads.fastq > overlaps.paf
racon_gpu -t 4 -c 4 reads.fastq overlaps.paf assembly.fasta > polished.fasta

Best regards,
Robert
@tijyojwad tijyojwad transferred this issue from another repository Jul 2, 2019
@tijyojwad tijyojwad transferred this issue from another repository Aug 15, 2019
@tijyojwad tijyojwad added the enhancement New feature or request label Aug 29, 2019
tijyojwad pushed a commit that referenced this issue Sep 4, 2019
@rvaser
Merge pull request #1 from clara-genomics/jdaw/merge-into-upstream
9330150 
[cuda] merge latest ClaraGenomicsAnalsysis related improvements
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@tijyojwad @rvaser