sawfish v0.12.0

v0.12.0 - 2024-05-23

Added

• CR-327 Add local SV phasing
  • Short-range phasing provided in VCF records wherever multiple hets are genotyped on one or more overlapping SV haplotypes

Changed

• CR-340 Improve handling of multi-breakpoint haplotypes
  • Improves detection of complex SV breakpoints, especially for small inversions
• CR-333 Adjust alignment for long breakpoint homology
  • Improves detection of high homology inversions
• CR-330 Expand trimmed read search region for small SV regions
  • Improves detection of soft-clipped evidence for low homology insertions