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fix docs #197

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fix docs

fix docs #197

Workflow file for this run

.github/workflows/build.yml at 4405762
name: build
on:
push:
branches: [main]
pull_request:
branches: ['main**']
release:
types: [created]
env:
BUILD_TYPE: Debug
jobs:
test_linux:
name: Test on Linux
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
submodules: 'True'
path: 'NGSTrefftz'
fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
- uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: install ngstrefftz
run: cd NGSTrefftz && pip install . && pip install numpy
- name: run test
run: cd $GITHUB_WORKSPACE/NGSTrefftz/test && python3 -m doctest -v *.py
build_wheels:
name: Build wheels on ${{ matrix.os }}
needs: [ test_linux ]
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-13]
include:
- os: windows-2019
cibw-arch: AMD64
cmake-generator: "Visual Studio 16 2019"
cmake_generator_platform: "x64"
steps:
- uses: actions/checkout@v4
with:
submodules: 'True'
fetch-tags: 'true'
fetch-depth: 0
- name: Build wheels
uses: pypa/cibuildwheel@v2.19.0
- uses: actions/upload-artifact@v4
with:
name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
path: ./wheelhouse/*.whl
build_sdist:
name: Build source distribution
needs: [ test_linux ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
submodules: 'True'
fetch-tags: 'true'
fetch-depth: 0
- name: Build sdist
run: pipx run build --sdist
- uses: actions/upload-artifact@v4
with:
name: cibw-sdist
path: dist/*.tar.gz
upload_pypi:
needs: [build_wheels, build_sdist]
runs-on: ubuntu-latest
environment: pypi
permissions:
id-token: write
steps:
- uses: actions/download-artifact@v4
with:
pattern: cibw-*
path: dist
merge-multiple: true
- uses: pypa/gh-action-pypi-publish@release/v1
if: github.ref == 'refs/heads/main' || github.event_name == 'release'
with:
skip-existing: true
password: ${{ secrets.PYPI_API_TOKEN }}
# To test: repository-url: https://test.pypi.org/legacy/
docker:
needs: [upload_pypi]
runs-on: ubuntu-latest
steps:
- name: clear cache
run: rm -rf /opt/hostedtoolcache
- name: Checkout
uses: actions/checkout@v4
- name: Docker meta
id: meta
uses: docker/metadata-action@v3
with:
# list of Docker images to use as base name for tags
images: paulstdocker/ngstrefftz
# generate Docker tags based on the following events/attributes
tags: type=semver,pattern={{version}}
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/#-action@v3
if: github.event_name == 'release' && github.event.action == 'created'
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- name: Build and push
uses: docker/build-push-action@v5
with:
context: .
file: "Dockerfile"
push: ${{ github.event_name == 'release' && github.event.action == 'created' }}
tags: ${{ steps.meta.outputs.tags }}
#labels: ${{ steps.meta.outputs.labels }}
pyodide:
#needs: [publish-pypi]
if: false
runs-on: ubuntu-latest
steps:
- name: clear cache
run: rm -rf /opt/hostedtoolcache
- uses: actions/checkout@v4
with:
fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
submodules: 'True'
path: 'NGSTrefftz'
- name: install pkgs
run: sudo apt-get update && DEBIAN_FRONTEND="noninteractive" sudo apt-get -y install docker
- name: build docker
run: cd $GITHUB_WORKSPACE/NGSTrefftz && docker build -t ngstpyodide -f .github/workflows/pyodide/Dockerfile .
- name: retrieve tar
run: id=$(docker create ngstpyodide) && docker cp $id:/root/output/ngstrefftz_pyodide.tar.bz2 $GITHUB_WORKSPACE/
- uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Build the JupyterLite site
run: |
cd $GITHUB_WORKSPACE/NGSTrefftz/.github/workflows/pyodide && python -m pip install -r requirements.txt
cd $GITHUB_WORKSPACE && jupyter lite build --pyodide ngstrefftz_pyodide.tar.bz2 --contents ./NGSTrefftz/docs/notebooks/ --output-dir ngst-pyodide
#- name: upload
#uses: actions/upload-pages-artifact@v3
- name: Store the sdist
uses: actions/upload-artifact@v4
with:
name: ngst-pyodide
path: ./ngst-pyodide
docs:
needs: [upload_pypi]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
submodules: 'True'
path: 'NGSTrefftz'
- name: install pkgs
run: sudo apt-get update && DEBIAN_FRONTEND="noninteractive" sudo apt-get -y install libxmu-dev tk-dev tcl-dev git libglu1-mesa-dev libblas-dev liblapack-dev python3 python3-pip python3-distutils python3-tk libpython3-dev python3-testresources npm nodejs pandoc -y
#- name: pip pkgs
#run: python3 -m pip list
- name: pip install requirements
run: pip install --user -r $GITHUB_WORKSPACE/NGSTrefftz/docs/requirements.txt
- name: set path
run: |
echo "NETGENDIR=/usr/bin/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${{ env.LD_LIBRARY_PATH }}:/home/runner/.local/lib:/usr/local/lib/" >> $GITHUB_ENV
- name: Build and Commit
uses: sphinx-notes/pages@v2
with:
repository_path: 'NGSTrefftz'
publish: false
#requirements_path: ./docs/requirements.txt
- name: Download pyodide stuff
if: false
uses: actions/download-artifact@v4
with:
name: ngst-pyodide
path: NGSTrefftz/ngst-pyodide
- run: tree -d .
- name: Upload
uses: actions/upload-pages-artifact@v3
with:
path: 'NGSTrefftz/'
deploy-docs:
needs: docs
permissions:
pages: write # to deploy to Pages
id-token: write # to verify the deployment originates from an appropriate source
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
runs-on: ubuntu-latest
#if: github.event_name == 'release' && github.event.action == 'created'
if: github.ref == 'refs/heads/main'
steps:
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v4
paper:
runs-on: ubuntu-latest
name: Paper Draft
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Build draft PDF
uses: openjournals/openjournals-draft-action@master
with:
journal: joss
paper-path: docs/paper/paper.md
- name: Upload
uses: actions/upload-artifact@v4
with:
name: joss_paper
path: docs/paper/paper.pdf