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TCGA data radiomics analysis pipelines

curl -s https://get.nextflow.io | bash
./nextflow run main.nf

TCGA_LUAD pipeline

Auto segmentation

curl -s https://get.nextflow.io | bash
./nextflow run main_LUAD.nf

TCGA_BRCA pipeline

Segmentation from radiogenomics project

curl -s https://get.nextflow.io | bash
./nextflow run main_BRCA.nf

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Radiomics pipeline for TCGA datasets

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  • Nextflow 56.9%
  • Python 43.1%