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Closes #45 replace format_* functions #49

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merged 5 commits into from
Jan 25, 2023
Merged

Closes #45 replace format_* functions #49

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3643157
replace format_* functions
Jan 21, 2023
46695e4
Merge branch 'main' into 45_adsl_codelist_kaz
Jan 24, 2023
12d1e77
remove format_* comments/functions
Jan 24, 2023
2bb9006
styler
Jan 24, 2023
bbb9ec8
update NAMESPACE
Jan 24, 2023
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19 changes: 9 additions & 10 deletions submission/programs/adsl.R
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Original file line number Diff line number Diff line change
Expand Up @@ -136,11 +136,10 @@ adsl00 <- dm %>%
# distinct(adsl_prod[which(adsl_prod$SITEGR1 == "900"), c("SITEID", "SITEGR1")])

adsl01 <- adsl00 %>%
create_cat_var(adsl_spec, AGE, AGEGR1, AGEGR1N) %>% # replace format_agegr1/format_agegr1n
create_var_from_codelist(adsl_spec, RACE, RACEN) %>% # replace format_racen
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Can you remove the comments #replace format_ everywhere?

mutate(
SITEGR1 = format_sitegr1(SITEID),
AGEGR1 = format_agegr1(AGE),
AGEGR1N = format_agegr1n(AGE),
RACEN = format_racen(RACE)
SITEGR1 = format_sitegr1(SITEID)
)

# Population flag ---------------------------------------------------------
Expand Down Expand Up @@ -227,10 +226,10 @@ vs00 <- vs %>%
select(STUDYID, USUBJID, VSTESTCD, AVAL) %>%
pivot_wider(names_from = VSTESTCD, values_from = AVAL, names_glue = "{VSTESTCD}BL") %>%
mutate(
BMIBL = round(WEIGHTBL / (HEIGHTBL / 100)^2, digits = 1),
BMIBLGR1 = format_bmiblgr1(BMIBL)
)

BMIBL = round(WEIGHTBL / (HEIGHTBL / 100)^2, digits = 1)
) %>%
create_cat_var(adsl_spec, BMIBL, BMIBLGR1) #replace format_bmiblgr1
sc00 <- sc %>%
filter(SCTESTCD == "EDLEVEL") %>%
select(STUDYID, USUBJID, SCTESTCD, SCSTRESN) %>%
Expand Down Expand Up @@ -279,9 +278,9 @@ adsl06 <- adsl05 %>%
add_one = TRUE
) %>%
mutate(
DURDIS = round(DURDIS, digits = 1),
DURDSGR1 = format_durdsgr1(DURDIS)
DURDIS = round(DURDIS, digits = 1)
) %>%
create_cat_var(adsl_spec, DURDIS, DURDSGR1) %>% # replace format_durdsgr1
derive_vars_dt(
dtc = RFENDTC,
new_vars_prefix = "RFEN",
Expand Down