Fix defined namespace warnings #2964
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Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace.
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* Fix defined namespace warnings Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace. * Fix tests that no longer need incorrect exceptions handled. * fix black formatting in test file * Undo typing changes, so this works on current pre-3.9 branch * better handling for any/all double-underscore properties * Don't include __slots__ in dir().
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* Fix defined namespace warnings Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace. * Fix tests that no longer need incorrect exceptions handled. * fix black formatting in test file * Undo typing changes, so this works on current pre-3.9 branch * better handling for any/all double-underscore properties * Don't include __slots__ in dir().
edmondchuc
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* Fix defined namespace warnings Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace. * Fix tests that no longer need incorrect exceptions handled. * fix black formatting in test file * Undo typing changes, so this works on current pre-3.9 branch * better handling for any/all double-underscore properties * Don't include __slots__ in dir().
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* 7.1.1 post release (#2953) * Fix Black formatting in ./admin/get_merged_prs.py (#2954) * build(deps-dev): bump ruff from 0.7.0 to 0.7.1 (#2955) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.0 to 0.7.1. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.7.0...0.7.1) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Ashley Sommer <ashleysommer@gmail.com> * Fix defined namespace warnings (#2964) * Fix defined namespace warnings Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace. * Fix tests that no longer need incorrect exceptions handled. * fix black formatting in test file * Undo typing changes, so this works on current pre-3.9 branch * better handling for any/all double-underscore properties * Don't include __slots__ in dir(). * test: earl test passing * Annotate Serializer.serialize and descendants (#2970) This patch aligns the type signatures on `Serializer` subclasses, including renaming the arbitrary-keywords dictionary to always be `**kwargs`. This is in part to prepare for the possibility of adding `*args` as a positional-argument delimiter. References: * #1890 (comment) Signed-off-by: Alex Nelson <alexander.nelson@nist.gov> * build(deps): bump orjson from 3.10.10 to 3.10.11 (#2966) Bumps [orjson](https://github.com/ijl/orjson) from 3.10.10 to 3.10.11. - [Release notes](https://github.com/ijl/orjson/releases) - [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md) - [Commits](ijl/orjson@3.10.10...3.10.11) --- updated-dependencies: - dependency-name: orjson dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.7.1 to 0.7.2 (#2969) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.1 to 0.7.2. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.7.1...0.7.2) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.7.2 to 0.7.3 (#2979) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.2 to 0.7.3. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.7.2...0.7.3) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.7.3 to 0.8.0 (#2994) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.3 to 0.8.0. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.7.3...0.8.0) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump orjson from 3.10.11 to 3.10.12 (#2991) Bumps [orjson](https://github.com/ijl/orjson) from 3.10.11 to 3.10.12. - [Release notes](https://github.com/ijl/orjson/releases) - [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md) - [Commits](ijl/orjson@3.10.11...3.10.12) --- updated-dependencies: - dependency-name: orjson dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * added Node as an exported name from the root package location. Updated linting commands section in the developer section to use ruff check. (#2981) * build(deps-dev): bump wheel from 0.45.0 to 0.45.1 (#2992) Bumps [wheel](https://github.com/pypa/wheel) from 0.45.0 to 0.45.1. - [Release notes](https://github.com/pypa/wheel/releases) - [Changelog](https://github.com/pypa/wheel/blob/main/docs/news.rst) - [Commits](pypa/wheel@0.45.0...0.45.1) --- updated-dependencies: - dependency-name: wheel dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nicholas Car <nick@kurrawong.net> * feat: sort longturtle blank nodes (#2997) * feat: sort longturtle blank nodes in the object position by their cbd string * fix: #2767 * build(deps-dev): bump pytest from 8.3.3 to 8.3.4 (#2999) Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.3 to 8.3.4. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.3.3...8.3.4) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump poetry from 1.8.4 to 1.8.5 (#3001) Bumps [poetry](https://github.com/python-poetry/poetry) from 1.8.4 to 1.8.5. - [Release notes](https://github.com/python-poetry/poetry/releases) - [Changelog](https://github.com/python-poetry/poetry/blob/1.8.5/CHANGELOG.md) - [Commits](python-poetry/poetry@1.8.4...1.8.5) --- updated-dependencies: - dependency-name: poetry dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.8.0 to 0.8.2 (#3003) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.8.0 to 0.8.2. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.8.0...0.8.2) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.8.2 to 0.8.3 (#3010) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.8.2 to 0.8.3. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.8.2...0.8.3) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump berkeleydb from 18.1.11 to 18.1.12 (#3009) Bumps [berkeleydb](https://www.jcea.es/programacion/pybsddb.htm) from 18.1.11 to 18.1.12. --- updated-dependencies: - dependency-name: berkeleydb dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> # Conflicts: # poetry.lock * build(deps): bump orjson from 3.10.12 to 3.10.13 (#3018) Bumps [orjson](https://github.com/ijl/orjson) from 3.10.12 to 3.10.13. - [Release notes](https://github.com/ijl/orjson/releases) - [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md) - [Commits](ijl/orjson@3.10.12...3.10.13) --- updated-dependencies: - dependency-name: orjson dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps-dev): bump ruff from 0.8.4 to 0.8.6 (#3025) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.8.4 to 0.8.6. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.8.4...0.8.6) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * feat: deterministic longturtle serialisation using RDF canonicalization + n-triples sort (#3008) * feat: use the RGDA1 canonicalization algorithm + lexical n-triples sort to produce deterministic longturtle serialisation * chore: normalise usage of format * chore: apply black * fix: double up of semicolons when subject is a blank node * fix: lint * jsonld: Do not merge nodes with different invalid URIs (#3011) When parsing JSON-LD with invalid URIs in the `@id`, the `generalized_rdf: True` option allows parsing these nodes as blank nodes instead of outright rejecting the document. However, all nodes with invalid URIs were mapped to the same blank node, resulting in incorrect data. For example, without this patch, the new test fails with: ``` AssertionError: Expected: @Prefix schema: <https://schema.org/> . <https://example.org/root-object> schema:author [ schema:familyName "Doe" ; schema:givenName "Jane" ; schema:name "Jane Doe" ], [ schema:familyName "Doe" ; schema:givenName "John" ; schema:name "John Doe" ] . Got: @Prefix schema: <https://schema.org/> . <https://example.org/root-object> schema:author <> . <> schema:familyName "Doe" ; schema:givenName "Jane", "John" ; schema:name "Jane Doe", "John Doe" . ``` * Fixed incorrect ASK behaviour for dataset with one element (#2989) * Pass base uri to serializer when writing to file. (#2977) Co-authored-by: Nicholas Car <nick@kurrawong.net> * Dataset documentation improvements (#3012) * example printout improvements * added BN graph creation * updated tests var names & added one subtest * typos & improved formatting * updated Graph & Dataset docco * typo fix * fix code-in-comment syntax * fix code-in-comment syntax 2 * fix code-in-comment syntax - ellipses * fix code-in-comment syntax - sort print loop output * blacked * ruff fixes * Poetry 2.0.0 pyproject.toml file * move to PEP621 (Poetry 2.0.0) pyproject.toml * require poetry 2.0.0 * require poetry 2.0.0 * add in requirement for poetry-plugin-export * change from --sync to sync command * further pyproject.toml format updates * add poetry plugin to requirements-poetry.in * fix pre-commit poetry version to 2.0.0 * remove testing artifact * update license to 2025 * add me to contributors * remove outdated --check arg * typo * test add back in precommit args * test remove precommit args * match ruff version to pre-commit autoupdate PR #3026; add back in --check * re-remove --check * add David to CONTRIBUTORS * ruff in pyproject.toml to match pre-commit * updates for David's comments * fix Dataset docc ReST formatting * remove ConjunctiveGraph example; add Dataset example; add JSON-LS serialization example * Add RDFLib Path to SHACL path utility and corresponding tests (#2990) * shacl path parser: Add additional test case * shacl utilities: Add new SHACL path building utility with corresponding tests --------- Co-authored-by: Nicholas Car <nick@kurrawong.net> # Conflicts: # rdflib/extras/shacl.py * fix: typing and import issues * fix: line length as int * fix: ruff version conflict * fix: berkeleydb pin to 18.1.10 for python 3.8 compatibility * 3a not 2a --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: Alex Nelson <alexander.nelson@nist.gov> Co-authored-by: Nicholas Car <nick@kurrawong.net> Co-authored-by: Ashley Sommer <ashleysommer@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Alex Nelson <alexander.nelson@nist.gov> Co-authored-by: joecrowleygaia <142864129+joecrowleygaia@users.noreply.github.com> Co-authored-by: Val Lorentz <vlorentz@softwareheritage.org> Co-authored-by: jcbiddle <114963309+jcbiddle@users.noreply.github.com> Co-authored-by: Sander Van Dooren <sandervd@users.noreply.github.com> Co-authored-by: Nicholas Car <nick@kurrawong.ai> Co-authored-by: Matt Goldberg <59745812+mgberg@users.noreply.github.com>
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Current docs-generation tests are polluted by lots of warnings that occur when Sphinx tries to read various parts of DefinedNamespace.