DESCRIPTION

Package: PTXQC
Type: Package
Title: Quality Report Generation for MaxQuant Results
Version: 0.92.3
Date: 2018-02-05
Author: Chris Bielow <chris.bielow@fu-berlin.de>
Maintainer: Chris Bielow <chris.bielow@fu-berlin.de>
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the 
             MaxQuant software suite (see 'http://www.maxquant.org').
             Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
             Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) 'doi:10.1021/acs.jproteome.5b00780'.
SystemRequirements: pandoc (http://pandoc.org) for building Vignettes and output reports as HTML 
Depends:
    R (>= 3.0.0)
Imports:
    data.table,
    ggplot2 (>= 2.2),
    ggdendro,
    graphics,
    grid,
    gridExtra,
    grDevices,
    gtable,
    kableExtra,
    knitr (>= 1.10),
    methods,
    plyr,
    proto,
    RColorBrewer,
    reshape2,
    rmarkdown,
    seqinr,
    stats,
    utils,
    yaml
Suggests:
    testthat
VignetteBuilder: knitr
License: GPL-2
Roxygen: list(wrap = FALSE)
RoxygenNote: 6.0.1
URL: https://github.com/cbielow/PTXQC
BugReports: https://github.com/cbielow/PTXQC/issues