v1.0.0

[Robaina]

This is a release post-review after submitting the package at PyOpenSci. Additionally, the streamlit app has been removed (subcommand pynteny app) as it will be released later on in a different, pip-installable package (as an addon too pynteny). This changed has two motivations: 1) facilitate solving dependencies by conda and 2) streamline pynteny's code base.

What's Changed

• python >= 3.8 by @Robaina in python >= 3.8 #36
• PyOpenSci REVIEW - Refactor code to meet PEP8 by @Robaina in PyOpenSci REVIEW - Refactor code to meet PEP8 #40
• PyOpenSci REVIEW - extract nested functions in LabelledFASTA by @Robaina in PyOpenSci REVIEW - extract nested functions in LabelledFASTA #47
• PyOpenSci REVIEW - minor updates by @Robaina in PyOpenSci REVIEW - minor updates #43
• PyOpenSci REVIEW - extract static classes and transfer to own modules by @Robaina in PyOpenSci REVIEW - extract static classes and transfer to own modules #45
• PyOpenSci REVIEW - add setup to docs, add building docs to contributing by @Robaina in PyOpenSci REVIEW - add setup to docs, add building docs to contributing #50
• change structure to adopt /src layout by @Robaina in change structure to adopt /src layout #54
• PyOpenSci REVIEW - config and download default directories by @Robaina in PyOpenSci REVIEW - config and download default directories #51
• PyOpenSci REVIEW - remove default location for PGAP download by @Robaina in PyOpenSci REVIEW - remove default location for PGAP download #57
• added config to install dir by @Robaina in added config to install dir #58
• PyOpenSci REVIEW - 59 some more minor changes by @Robaina in PyOpenSci REVIEW - 59 some more minor changes #60
• Chore/add qoc config by @Batalex in Chore/add qoc config #62
• Ensure file inputs are of type Path by @Robaina in Ensure file inputs are of type Path #63
• 29 deal with genome id when building peptide database by @Robaina in 29 deal with genome id when building peptide database #64
• add file name to files in fasta dir by @Robaina in add file name to files in fasta dir #68
• 69 download pfam database and split models into separate files by @Robaina in 69 download pfam database and split models into separate files #70
• update docs by @Robaina in update docs #72
• Adjacent repeated genes by @Robaina in Adjacent repeated genes #73
• 74 optional prepend file name when multiple input files by @Robaina in 74 optional prepend file name when multiple input files #75
• 77 Remove Streamlit App by @Robaina in 77 Remove Streamlit App #81
• Requests + tqdm instead of python-wget by @Robaina in Requests + tqdm instead of python-wget #84

New Contributors

• @Batalex made their first contribution in Chore/add qoc config #62

Full Changelog: v0.0.5...v1.0.0

---

This discussion was created from the release v1.0.0.