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[GEN-1408] PoC: Remove rows of data containing SEQ_ASSAY_ID that are filtered out #573

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@thomasyu888 thomasyu888 commented Jul 8, 2024

Problem

The assay information file still contained SEQ_ASSAY_ID's that should be ignored or filtered out. This probably wouldn't happen too often, but should be accounted for.

  • bed
  • assay information

Solution:
Filter out rows containing SEQ_ASSAY_ID that isn't part of clinical file

Extras:
The genomic regions file can now be stored as such instead of genie_bed.txt

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sonarqubecloud bot commented Jul 8, 2024

@thomasyu888 thomasyu888 changed the title [GEN-1408] Remove rows of data containing SEQ_ASSAY_ID that are filtered out [GEN-1408] PoC: Remove rows of data containing SEQ_ASSAY_ID that are filtered out Jul 9, 2024
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