Update base project config files #63
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| # Builds the aeon environment, flakes via flake8, checks type annotations via mypy, tests via pytest, | |
| # reports test coverage via pytest-cov and codecov, and reports security vulnerabilities via bandit. | |
| name: build_env_run_tests | |
| on: | |
| push: | |
| branches: [ main, reorg, jai_dev, config ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: # Allows running manually from Github's 'Actions' tab | |
| jobs: | |
| build_env_run_tests: | |
| name: Build env and run tests on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} # reset shell for each step | |
| steps: | |
| - name: checkout repo | |
| uses: actions/checkout@v2 | |
| - name: set up conda env | |
| uses: conda-incubator/setup-miniconda@v2 # from github marketplace | |
| with: | |
| activate-environment: aeon | |
| environment-file: ./env_config/env.yml | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| - name: Update conda env with dev reqs | |
| run: mamba env update -f ./env_config/env_dev.yml | |
| - name: flake | |
| run: python -m flake8 . | |
| - name: mypy | |
| run: python -m mypy . | |
| - name: bandit | |
| run: python -m bandit . -r -ll | |
| - name: pytest | |
| run: python -m pytest tests/ | |
| # Only run coverage report job and upload for ubuntu. | |
| - name: generate test coverage report | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| python -m pytest --cov=aeon ./tests/ --cov-report=xml:./tests/test_coverage/test_coverage_report.xml | |
| python -m pytest --cov=aeon ./tests/ --cov-report=html:./tests/test_coverage/test_coverage_report_html | |
| - name: upload test coverage report to codecov | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./tests/test_coverage/ | |
| files: test_coverage_report.xml | |
| fail_ci_if_error: true | |
| verbose: true |