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SchriderLab

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  1. Timesweeper Timesweeper Public

    Python package for detecting positive selective sweeps using time-series genomics sampling data.

    Python 18 2

  2. Tree_learning Tree_learning Public

    Code for accurate inference of tree topologies from multiple sequence alignments using deep learning

    R 9 1

  3. drosophila_phylogeny drosophila_phylogeny Public

    Pipeline overview and code (including BLT-DCT program) for widespread introgression across a phylogeny of 155 Drosophila genomes

    R 8 1

  4. introNets introNets Public

    Python 6 1

  5. timesweeper-experiments timesweeper-experiments Public

    Repo for experiments for the TimeSweeper manuscript.

    Jupyter Notebook 4 1

  6. PG-Alignments-GAN PG-Alignments-GAN Public

    Generative Adversarial Network (GAN) of Population Genetic Alignments

    Python 3 1

Repositories

Showing 10 of 19 repositories
  • SchriderLab/cancer_sims’s past year of commit activity
    Slim 0 MIT 0 0 0 Updated Oct 8, 2024
  • TreeSeqPopGenInference Public

    Exploring how to use tree sequences for multiple population genetic inference tasks.

    SchriderLab/TreeSeqPopGenInference’s past year of commit activity
    Shell 2 1 0 0 Updated Oct 1, 2024
  • simscale-snakemake Public

    Snakemake pipeline for parsing simulation outputs across scaling factors

    SchriderLab/simscale-snakemake’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2024
  • SchriderLab/selectionScanExercise’s past year of commit activity
    HTML 1 1 0 0 Updated May 22, 2024
  • SchriderLab/evoMLWorkshop2024’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated May 17, 2024
  • Timesweeper Public

    Python package for detecting positive selective sweeps using time-series genomics sampling data.

    SchriderLab/Timesweeper’s past year of commit activity
    Python 18 MIT 2 3 0 Updated Apr 9, 2024
  • PG-Alignments-GAN Public

    Generative Adversarial Network (GAN) of Population Genetic Alignments

    SchriderLab/PG-Alignments-GAN’s past year of commit activity
    Python 3 1 0 0 Updated Feb 21, 2024
  • SchriderLab/introNets’s past year of commit activity
    Python 6 GPL-3.0 1 3 0 Updated Feb 2, 2024
  • geneConvSweeps Public

    Code for simulation study exaiming the impact of gene conversion on the "softness" of selective sweeps

    SchriderLab/geneConvSweeps’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 21, 2023
  • timesweeper-experiments Public

    Repo for experiments for the TimeSweeper manuscript.

    SchriderLab/timesweeper-experiments’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 0 Updated May 9, 2023

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