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  1. HLA_microbiome HLA_microbiome Public

    Data analysis and figures for 'Quantifying the impact of Human Leukocyte Antigen on the human gut microbiome

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  2. SARS-CoV-2_Protection_SGTF_Delta_Omicron_BA1_BA2 SARS-CoV-2_Protection_SGTF_Delta_Omicron_BA1_BA2 Public

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  4. STM_SARS_CoV_2_genomic_epidemiology STM_SARS_CoV_2_genomic_epidemiology Public

    Codebase for Andeweg, S. P., Vennema, H., Veldhuijzen, I., Smorenburg, N., Schmitz, D., Zwagemaker, F., ... & RIVM COVID-19 Molecular epidemiology group‡. (2022). Elevated risk of infection with SA…

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  5. SARS-CoV-2_protection_SGTF_Omicron_BA2_BA4-5 SARS-CoV-2_protection_SGTF_Omicron_BA2_BA4-5 Public

    Scripts for case-only analysis "Higher risk of SARS-CoV-2 Omicron BA.4/5 infection than of BA.2 infection after previous BA.1 infection, the Netherlands, 2 May to 24 July 2022"

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  6. SARS-CoV-2_hybrid_immunity_serology_delta_omicron SARS-CoV-2_hybrid_immunity_serology_delta_omicron Public

    Codebase for den Hartog, G.*, Andeweg, S.P.*, Hoeve, C.E. et al. Assessment of hybrid population immunity to SARS-CoV-2 following breakthrough infections of distinct SARS-CoV-2 variants by the dete…

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