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  1. MuTrigo MuTrigo Public

    Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-0…

    Python 3

  2. Misc_NGS Misc_NGS Public

    various tools that help with deep sequencing analysis

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  3. Axminster7A Axminster7A Public

    Scripts and code used in the Pm1/AvrPm1 cloning paper ( https://doi.org/10.1111/nph.17075) for analysis of chromosome 7A from bread wheat cultivar Axminster. All commands and programs run in Linux …

    Python

  4. OatCrownRust OatCrownRust Public

    Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux envi…

    Python

  5. calcGDV calcGDV Public

    tool for calculating genotypic diagnostic values for discrete traits or classes given variant calling and phenotypic data

    Python