Adding manually parmed to see if causes the issue #192

# to view logs

	name: CI

	on: [push]

	jobs:
	tests:
	name: Test on ${{ matrix.os }}, 🐍=${{ matrix.python-version }}, Program=${{ matrix.conda-env }}
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest"]
	python-version: ["3.9", "3.10", "3.11"]

	steps:
	- uses: actions/checkout@v4

	- name: Additional info about the build
	shell: bash
	run: \|
	uname -a
	df -h
	ulimit -a

	- name: Create Environment
	uses: mamba-org/setup-micromamba@v2
	with:
	environment-file: environment.yml
	environment-name: ties
	create-args: >-
	python=${{ matrix.python-version }}

	- name: Environment Information
	shell: bash -l {0}
	run: \|
	conda info
	conda list --show-channel-urls

	- name: Install ties
	shell: bash -l {0}
	run: \|
	python -m pip install --no-deps .

	- name: Install pytest
	shell: bash -l {0}
	run: \|
	pip install pytest

	- name: Run pytest
	shell: bash -l {0}
	run: \|
	cd ties/testing
	python -m pytest

	# - name: Simple Ligand renaming
	# run: \|
	# cd ties/examples/mol2_2ligands_MCL1
	# python3 lig_api.py

	- name: Use min API
	shell: bash -l {0}
	run: \|
	cd ties/examples/mol2_2ligands_MCL1
	python3 min_api.py
	python3 .test_min_api.py

	- name: Use API
	shell: bash -l {0}
	run: \|
	cd ties/examples/mol2_2ligands_MCL1
	python3 api.py

	- name: CMD hybrid
	shell: bash -l {0}
	run: \|
	cd ties/examples/mol2_2ligands_MCL1
	ties -l l02.mol2 l03.mol2 -nc -1 -dir cmdties

	- name: CMD with protein
	shell: bash -l {0}
	run: \|
	cd ties/examples/mol2_2ligands_MCL1
	ties -l l02.mol2 l03.mol2 -nc -1 -dir cmdties_protein -p protein.pdb

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