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docs(fragpipe): Update vignette to include label free example #105

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merged 1 commit into from
Feb 6, 2025

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@tonywu1999 tonywu1999 commented Feb 6, 2025

Motivation and Context

One user mistakenly thought that Fragpipe didn't have a LFQ version of a PTM converter. However, we recently updated Fragpipe to have an LFQ version of a PTM converter. We should make this clear in the vignettes.

Changes

  • Update vignette to include examples of Fragpipe LFQ processing for MSstatsPTM and remove sentence claiming that it's still under development.

Testing

Not needed

Checklist Before Requesting a Review

  • I have read the MSstats contributing guidelines
  • My changes generate no new warnings
  • Any dependent changes have been merged and published in downstream modules

@tonywu1999 tonywu1999 merged commit 2ec046c into devel Feb 6, 2025
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