First release of Crypts_SpatialOrganization

ImageJ macro which Segment colon crypts from z-projection of SHG images of fibrillar collagen and Quantify fibrosis by analyzing the spatial organization of the crypts.
Version released for publication of the "Heat Shock Factor 1-dependent extracellular matrix remodeling mediates the transition from chronic intestinal inflammation to colon cancer" by Levi-Galibov et al.