linkapy

A framework that encompasses a number of techniques applicable to scNMT-seq analysis.

Installation

pip install .

Todo

core-todo

• Installeable
• nextflow output -> anndata
• sparse_miss
• bins
• CNV ~ 'matrix' (cell x regions -> colname)
• make modalities optional
• exclusion -> blacklist (bed)
• annotations
• integrations

meta-todo

• readthedocs setup
• API exposure
• CLI
• actions - lint, action
• testdata
• test - parse
• test - anndata