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105 Open 86 Closed
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Issues list

How to get same Y axis range for plotAvgProf
#249 opened Dec 18, 2024 by Krithika-Bhuvan
chipseeker se2gene not working
#248 opened Dec 16, 2024 by ICE0584
questions about the annotation results from ChIPseeker.
#247 opened Dec 5, 2024 by xuxuefen007
Error in plotAvgProf.internal(): "please specify appropreate xcoordinations"
#240 opened Sep 22, 2024 by Panzer-vor-08
how to make a V5 column?
#239 opened Sep 6, 2024 by sugiYag
Error: invalid subscript
#238 opened Aug 12, 2024 by CherryX727
3
Coloration of plotAvgProf
#237 opened Jul 29, 2024 by aaron-varg
5 of 8 tasks
Mismatch between rownames of tagMatrix and windows indexes
#236 opened May 24, 2024 by lufce
Most distances in the flank_gene_distances column are 0
#235 opened Mar 23, 2024 by rejo27
ctg开头的染色体号和geneChr不一样
#234 opened Mar 18, 2024 by Sherry520
error with Ensembl-based annotation
#233 opened Mar 11, 2024 by yfan18
4 tasks
Would be good to add an error message if the peakfile is not bed file
#232 opened Feb 24, 2024 by pocession
Feature request: flexible distance ranges in plotDistToTSS()
#231 opened Jan 24, 2024 by perinom
A. thaliana annotation mistakes
#230 opened Jan 19, 2024 by BHB26
annotatePeak using multiple cores?
#229 opened Jan 16, 2024 by kelly-sovacool
peakHeatmap split.default error
#228 opened Jan 14, 2024 by thugib
invalid DB file
#225 opened Dec 8, 2023 by hanguojun007
When using enrichPeakOverlap, why the p values of different target peaks are same?
#224 opened Dec 5, 2023 by Dragonlongzhilin
genomicAnnotationPriority ChIPseeker v1.36.0
#223 opened Oct 23, 2023 by HAOXUANmogu
6
A bug or a problem when using ChIPseeker to do genomic annotation ?
#221 opened Jun 20, 2023 by Xiangyi-Deng
How can I get the digital percentages of the gene components of plotAnnoBar?
#220 opened Apr 25, 2023 by danli349
Can it be as highly customizable as "computeMatrix" in deeptools? for example if I want to plot the distribution of genes on the TAD boundary?
#217 opened Mar 7, 2023 by kuangzhuoran
covplot
#215 opened Jan 11, 2023 by ybaeus
Critical errors in annotating introns and exons - wrong gene
#214 opened Dec 28, 2022 by tjparnell
2
Error in split.default(1:length(windows), as.factor(seqnames(windows))) : group length is 0 but data length > 0 In addition: Warning message: In .merge_two_Seqinfo_objects(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)
#213 opened Dec 28, 2022 by xuyiwennn
8 tasks
ProTip! no:milestone will show everything without a milestone.