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@Zymo-Research

Zymo Research

Innovative & Quality tools for Epigenetics Research and DNA/RNA Purification.

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  1. figaro figaro Public

    An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

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  2. docker-bcl2fastq docker-bcl2fastq Public

    Docker container for Illumina bcl2fastq

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  3. miqScore16SPublic miqScore16SPublic Public

    Repo for public-facing 16s miq score

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  4. zymoTransmit zymoTransmit Public

    Python script to facilitate uploading COVID-19 test results to departments of health

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  5. miqScoreShotgunPublic miqScoreShotgunPublic Public

    Repo for public-facing shotgun MIQ score

    HTML 7 6

  6. VirSieve VirSieve Public

    Run manager for the VirSieve Pipeline by Zymo Research

    Python 5 2

Repositories

Showing 10 of 39 repositories
  • nf-core_sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Zymo-Research/nf-core_sarek’s past year of commit activity
    Nextflow 0 MIT 432 0 0 Updated Mar 5, 2025
  • aladdin-shotgun Public
    Zymo-Research/aladdin-shotgun’s past year of commit activity
    Python 1 MIT 2 8 0 Updated Mar 5, 2025
  • aladdin-miqScoreShotgun Public
    Zymo-Research/aladdin-miqScoreShotgun’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Feb 26, 2025
  • nf-core-Sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Zymo-Research/nf-core-Sarek’s past year of commit activity
    Nextflow 0 MIT 432 0 0 Updated Feb 26, 2025
  • aladdin-rnaseq Public

    Public repository for RNAseq pipeline to be run on Aladdin platform

    Zymo-Research/aladdin-rnaseq’s past year of commit activity
    Python 3 MIT 0 2 0 Updated Feb 22, 2025
  • service-pipeline-documentation Public

    Public repository to educate customers about bioinformatics pipelines and reports for services we offer

    Zymo-Research/service-pipeline-documentation’s past year of commit activity
    HTML 4 1 1 0 Updated Jan 3, 2025
  • VirSieve Public

    Run manager for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieve’s past year of commit activity
    Python 5 2 2 0 Updated Dec 16, 2024
  • aladdin-miqScore16S Public

    Nextflow pipeline that calculates MIQ score. Compatible with Aladdin platform

    Zymo-Research/aladdin-miqScore16S’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Dec 12, 2024
  • miqScore16SPublic Public

    Repo for public-facing 16s miq score

    Zymo-Research/miqScore16SPublic’s past year of commit activity
    HTML 8 GPL-3.0 4 6 2 Updated Dec 6, 2024
  • VirSieveVEP Public

    VEP functionality and called variant analysis for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieveVEP’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Dec 4, 2024
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