PoplarRootZn-dbSearch

R shiny web app for searching and downloading results from a ChIP-Seq and RNA-Seq experiment in Populus.

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How to run PoplarRootZn-dbSearch web application

For running this web application you will need to instal R on your Personal Computer

After installing R you you need to install R shiny. Open R and type:

install.packages('shiny')

For more information about R shiny please visit the Shiny webpage

Run the app remotely within R

For runnig this app open the R environment and type:

library(shiny)
runGitHub('PoplarRootZn-dbSearch', 'aariani')

Run the app locally

For runnign the app locally you need to download the entire repo

You can download everything in zip format by clicking the Clone or download button on this web page. Save and unpack the zip archive in your working directory

Alternatively you can clone with git by typing from the terminal:

git clone https://github.com/aariani/PoplarRootZn-dbSearch

Within the PoplarRootZn-dbSearch folder open R and type:

library(shiny)
runApp()

How to cite this app

If you will use this app for your research please cite our published manuscript in Environmental and Experimental Botany:

Ariani, A., Romeo, S., Groover, A.T., Sebastiani, L., 2016. Comparative epigenomic and transcriptomic analysis of Populus roots under excess Zn. 
Environ. Exp. Bot. 132, 16–27. doi:10.1016/j.envexpbot.2016.08.005