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Loris 14.12

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@samirdas samirdas released this 19 Dec 21:39

This release is designed to fix minor issues including permissions and cosmetics
Click here for a full list of changes

Improvements and Documentation

  • Documentation migration to GitHub wiki for Setup and Developer’s Guide
  • Improved Configuration module
  • Upgraded version of BrainBrowser
  • Document Repository upload/download/delete functionality
  • Cleaned up error handling by replacing PEAR errors with PHP exceptions

Beta modules

  • MRI upload page times out for large datasets; this does not impact the upload operation. Creates /tmp/ subdirectory which should be cleaned up to conserve space. Parallel uploading not recommended.
  • Document Repository GUI improvements with future improvements planned to structural layout
  • Data Team Helper for tracking data entry
  • Data Integrity Flag module for tracking dataset validation progress
  • Examiner Certification tracker for clinical staff
  • Examiner Reliability for clinical/psychometric assessments
  • Instrument Manager

Notes for Existing Projects

  • Many permissions have been renamed and/or made more granular. User permission re-granting may be required for modules such as Imaging Browser, Instrument Builder, Candidate Parameters, and more.
  • Document Repository files have moved. From your lorisroot directory (e.g. /var/www/loris/), run (sudo) the following command to move all previously uploaded files to the new location:
    mv htdocs/document_repository/* modules/document_repository/user_uploads
    Run patch SQL/14.12/2014-12-15-DocumentRepositoryDataDir.sql to update paths in document_repository table.
  • Statistics sub-modules are now registered via the new StatisticsTabs table
  • Developers Guide documentation moved to GitHub wiki
  • Old “Data Query GUI” tables, code and directories have been removed. (can be restored using “git revert 0eb4889”)
  • Removed two files used only by legacy instruments: RequiredIf.inc RequiredIfGroup.inc Move these files to project/libraries/ if still required by your php instruments.

Known Issues

  • A few scripts in the tools/ directory use old calls to create Config and Database objects. These lines should be removed where not required by the script, or else updated to use methods found in the LORIS base classes.