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Typo in manual? (genomeTransformVCF) #2029

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Typo in manual? (genomeTransformVCF) #2029

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4 changes: 2 additions & 2 deletions extras/doc-latex/STARmanual.tex
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Expand Up @@ -634,7 +634,7 @@ \section{STARconsensus}

\begin{itemize}
\item
Provide the VCF file with consensus SNVs and InDels at the genome generation stage with \opt{genomeTransformVC} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Haploid}.
Provide the VCF file with consensus SNVs and InDels at the genome generation stage with \opt{genomeTransformVCF} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Haploid}.
The alternative alleles in this VCF will be inserted to the reference genome to create a "transformed" genome.
Both the genome sequence and transcript/gene annotations are transformed.

Expand All @@ -650,7 +650,7 @@ \section{STARdiploid}

\begin{itemize}
\item
Provide the VCF file with diploid SNVs and InDels at the genome generation stage with \opt{genomeTransformVC} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Diploid}.
Provide the VCF file with diploid SNVs and InDels at the genome generation stage with \opt{genomeTransformVCF} \optv{ Variants.vcf} \opt{genomeTransformType} \optv{Diploid}.
The homozygous and heterozygous alleles from this VCF will be inserted into the reference genome to create a "transformed" genome with two haplotypes.
Both the genome sequence and transcript/gene annotations are transformed.

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