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.gitignore
.gitignore
 
 
README.md
README.md
 
 
add_fake_rg.sh
add_fake_rg.sh
 
 
alnscore.py
alnscore.py
 
 
bam_est_err.py
bam_est_err.py
 
 
bam_readlen.sh
bam_readlen.sh
 
 
bam_sq2bed.sh
bam_sq2bed.sh
 
 
bam_to_genomefile.sh
bam_to_genomefile.sh
 
 
bam_unclip.py
bam_unclip.py
 
 
bedlen.sh
bedlen.sh
 
 
binning.sh
binning.sh
 
 
bioutils.py
bioutils.py
 
 
conv_blasr_samqv.py
conv_blasr_samqv.py
 
 
counts.py
counts.py
 
 
decode_ascii_phred.py
decode_ascii_phred.py
 
 
describe.py
describe.py
 
 
fa2vie.sh
fa2vie.sh
 
 
fasta_to_fastq.py
fasta_to_fastq.py
 
 
fastq_barcode.sh
fastq_barcode.sh
 
 
fastq_enc_from_fastqc.sh
fastq_enc_from_fastqc.sh
 
 
fastq_num_reads.py
fastq_num_reads.py
 
 
find_missing.sh
find_missing.sh
 
 
flatten_mutatrix_vcf.py
flatten_mutatrix_vcf.py
 
 
gapped_contig_joiner.py
gapped_contig_joiner.py
 
 
gb_annotation_transfer.py
gb_annotation_transfer.py
 
 
genome_split.py
genome_split.py
 
 
h5tosam.py
h5tosam.py
 
 
hrun_from_fa.py
hrun_from_fa.py
 
 
join_small_regions.py
join_small_regions.py
 
 
mempeak.sh
mempeak.sh
 
 
mutect_cat.py
mutect_cat.py
 
 
nuc_info.py
nuc_info.py
 
 
paired_nuc_freqs_from_bam.py
paired_nuc_freqs_from_bam.py
 
 
pairs_from_nsorted_bam.py
pairs_from_nsorted_bam.py
 
 
pb_indelquals_to_bam.py
pb_indelquals_to_bam.py
 
 
plot_recal.py
plot_recal.py
 
 
prune_aln_cols.py
prune_aln_cols.py
 
 
repeats_to_bed.py
repeats_to_bed.py
 
 
revcomp.py
revcomp.py
 
 
rnaplfold.py
rnaplfold.py
 
 
rnaplfold_to_wig.py
rnaplfold_to_wig.py
 
 
run_prefab.py
run_prefab.py
 
 
run_prefab.py.README
run_prefab.py.README
 
 
seqstat.py
seqstat.py
 
 
snver_vcf_pv_to_qual.py
snver_vcf_pv_to_qual.py
 
 
split_nsorted_bam.py
split_nsorted_bam.py
 
 
splitbam.py
splitbam.py
 
 
sq_from_bam.sh
sq_from_bam.sh
 
 
strelka_indel_af.py
strelka_indel_af.py
 
 
uniqc.sh
uniqc.sh
 
 
uniquify_fasta_ids.sh
uniquify_fasta_ids.sh
 
 
varscan_vcf_pv_to_qual.py
varscan_vcf_pv_to_qual.py
 
 
vcf_get_val.py
vcf_get_val.py
 
 
vcf_matches_ref.py
vcf_matches_ref.py
 
 
vcf_read_support.py
vcf_read_support.py
 
 
vcf_shared_multi.py
vcf_shared_multi.py
 
 
vcf_var_rel_pos.py
vcf_var_rel_pos.py
 
 
vcf_venn.py
vcf_venn.py
 
 

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compbio-utils

Miscellaneous, very simple bioinfo scripts.

Use at your own risk. Contains broken, old and orphaned stuff.

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miscellaneous bioinfo scripts

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