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1. evolbioinfo/pastml evolbioinfo/pastml Public

   Ancestral character reconstruction and visualisation for rooted phylogenetic trees

   Python 32 6

2. SED-ML/KiSAO SED-ML/KiSAO Public

   Ontology of algorithms for analyzing biological models, their parameters, and their outputs

   HTML 10

3. evolbioinfo/bdei evolbioinfo/bdei Public

   Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

   Python 3

4. evolbioinfo/phylodeep evolbioinfo/phylodeep Public

   PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

   Python 22 6

5. evolbioinfo/HIV1-UK evolbioinfo/HIV1-UK Public

   Analysis of drug resistance mutation patterns in the UK

   HTML

6. evolbioinfo/bdpn evolbioinfo/bdpn Public

   Birth-death epidemiological parameter estimator accounting for partner notification

   Python 1