- I prefer and accept Academics | Scientist | System Administrator | Bioinformatician. Curriculum Vitae | Past Employers References | Scopus | Web of Science | Frontiers
- Research areas: Bioinformatics | Deep Learning | System Administration. Lead data analyst/bioinformatician in all the employment. Lead the development/establishment and management of computing clusters.
- Extremely collaborative,communicative, approachable, motivated, solution oriented, responsive, and initiative taker.
- All code and ideas concieved and written by me unless specified.
- Read and write computing data structures and algorithms, and dont use AI as of now.
- Current: Python, GO, RUST. Dropped C++ 2021
- In terms of data analysis, i have also used JuliaLang and dropped recently.
- Deep Learning: PyTorch, Tensorflow, Keras, XGBoost, Scikit-learn, Fastai, Markdown.
- System Analyst | HPC | Database: Git, Grafana, LDAP, Bash, Systemd, Apptainer, Docker, SQlite3, PostgresSQL, SLURM.
- Web Develpoment: Shiny/ShinyExpress, Streamlit, Django, Flask, HUGO, HTMx, Axum, Actix, Leptos.
- 2023-2024: Universitat Potsdam,Germany, benchmarked PacBioHifi and self-learnt GO and RUST including GraphQL,Web-RUST and System Programming (August-December,2024),
- 2021-2023: Self-learnt Python Machine/Deep learning and System Administration/DevOPS.
- 2020-2021: Finnish Museum of Natural History, Finland. I completed genome assembly, annotations, markers genes, ITS, and phylogenomics of over 500 fungal species using NextSeq.
- 2017-2021: Finnish Museum of Natural History, Finland, where I completed pacbio sequencing, assembly, annotations, organelle genomes and evolutionary/phylogenomic/comparative genomics approaches of lower plants Coleochaete orbicularis, Blasia pusilla, Chaetospiridium orbicularis, Polytrichum commune, Mallomonas, and Cryptomonas. Additionally, I worked for collaboration with Edinburgh UK, to analyse the PAFTOL species and the chloroplast genomes of the Ambrosia clade from Norway.
- 2016-2017: University of Connecticut, USA, where I analyzed the Douglas fir genome from genome annotation to the phylogenomics.
- 2014–2016: University of Technology, Sydney, Australia, where I developed computational methods for seagrasses.
- 2011-2014: Fondazione Edmund Mach, Italy, where I developed and analyzed bioinformatics methods for nuclear and organelle genomes, metagenomics from fungal and bacterial both whole genome as well as 16S and ITS sequencing.
Bioinformatics | Deep Learning | System Administration. Dropped C++ 2021. 2021: Python, Rust, Go
- Potsdam, Brandenburg, Germany
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08:44
(UTC +01:00) - https://orcid.org/0000-0002-4157-9405
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python-datastructure-algorithms
python-datastructure-algorithms Publicmy approach of solving the leetcode, interviewcode and other questions
Python
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python-tairaccession
python-tairaccession Publicpython package for arabidopsis genome analysis
Python
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rust-alignment-viewer
rust-alignment-viewer Publicrust embedded approach for genome alignments
Rust
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