Skip to content

Issues: arendsee/phylostratr

New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

16 Open 16 Closed
16 Open 16 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bias if I use directly a transcriptome fasta file in the strata object?
#33 opened Jul 24, 2024 by LPioL
Issue with strata_uniprot_pfam_map- no applicable method for 'mutate'
#32 opened Jul 4, 2024 by mbarkdull
Error in sql_integer_list(x) when trying strata_convert()
#31 opened Apr 24, 2024 by wolfylair
1
"ncbi_tree" function error: Error in x$id : $ operator is invalid for atomic vectors
#30 opened Aug 21, 2023 by minzooey
1
Error: The focal species is not present in UniProt
#29 opened Aug 4, 2023 by CWYuan08
3
Error in if (class(strata) != "Strata") { : the condition has length > 1
#28 opened Feb 9, 2023 by Dabaixian
1
Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) : Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta In addition: Warning message: In system2("makeblastdb", stderr = TRUE, stdout = TRUE, args = c("-dbtype", : running command '"makeblastdb" -dbtype prot -in Araport11_genes.201606.pep.fasta -out blastdb/Araport11_genes.201606.pep.fasta' had status 1
#27 opened Nov 9, 2022 by xuezhang335
10
May I use Phylostratr to study the genomic phylostratigraphy of Mycobacterium tuberculosis?
#24 opened Jul 6, 2022 by TaoCheng98
Error when importing external blast results
#23 opened Nov 25, 2021 by fka21
strata_blast issue, similar to #15
#22 opened Nov 16, 2021 by GavinLu42
Duplicated factor levels while calling stratify()
#21 opened Oct 12, 2020 by fka21
No alias or index file found
#20 opened Aug 11, 2020 by paolacornejo
BLAST Database error
#17 opened Jul 9, 2020 by maxnest
3
Issues in compiling results
#12 opened Sep 4, 2019 by priyanka8590
Invalid Strata object
#10 opened Jul 22, 2019 by champ52018
8
Heatmap layout bug
#8 opened Feb 6, 2019 by Piergiorge
8
ProTip! Adding no:label will show everything without a label.