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Update rename_dict on io_pymc3.py converter to follow schema convention #1555

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merged 7 commits into from
Feb 14, 2021
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Merged

Update rename_dict on io_pymc3.py converter to follow schema convention #1555

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d573071
Update rename_dict on io_pymc3.py converter to follow schema convention
madhucharan Feb 12, 2021
1ce90a9
Updated `io_pymc3.py` rename dict to follow schema convention
madhucharan Feb 12, 2021
2047ed5
Update `io_pymc3.py` rename dict to follow schema convention and upda…
madhucharan Feb 12, 2021
8b37bf1
Merge branch 'update-io_pymc3py' of https://github.com/madhucharan/ar…
madhucharan Feb 12, 2021
5d0bd2d
update CHANGELOG.md
madhucharan Feb 12, 2021
1467079
Update CHANGELOG.md
madhucharan Feb 13, 2021
91bf068
Update Maintenance and Fixes in CHANGELOG.md
madhucharan Feb 13, 2021
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -6,9 +6,11 @@
* Added confidence interval band to auto-correlation plot ([1535](https://github.com/arviz-devs/arviz/pull/1535))

### Maintenance and fixes
* Updated `io_pymc3.py` rename dict to follow schema convention([1555](https://github.com/arviz-devs/arviz/pull/1555))
* Updated `from_cmdstan` and `from_numpyro` converter to follow schema convention ([1541](https://github.com/arviz-devs/arviz/pull/1541) and [1525](https://github.com/arviz-devs/arviz/pull/1525))
* Fix calculation of mode as point estimate ([1552](https://github.com/arviz-devs/arviz/pull/1552))


### Deprecation
* Removed Geweke diagnostic ([1545](https://github.com/arviz-devs/arviz/pull/1545))

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7 changes: 6 additions & 1 deletion arviz/data/io_pymc3.py
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Expand Up @@ -274,7 +274,12 @@ def posterior_to_xarray(self):
def sample_stats_to_xarray(self):
"""Extract sample_stats from PyMC3 trace."""
data = {}
rename_key = {"model_logp": "lp"}
rename_key = {
"model_logp": "lp",
"mean_tree_accept": "acceptance_rate",
"depth": "tree_depth",
"tree_size": "n_steps",
}
data = {}
data_warmup = {}
for stat in self.trace.stat_names:
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