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Code to read DNA sequence files in the UCSC Genome Browser 2bit format

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TwoBit

Code to read DNA sequence files in the UCSC Genome Browser 2bit format (details at: http://genome.ucsc.edu/FAQ/FAQformat.html#format7).

Repository contains various implementations:

  1. C library (twobit.c twobit.h)
  2. An R wrapper around the C implementation (pkg folder)
  3. A Rust wrapper around the C implementation (rust folder)
  4. A Rust native implementation (rust-native folder)

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Code to read DNA sequence files in the UCSC Genome Browser 2bit format

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  • Rust 48.8%
  • C 39.9%
  • R 9.6%
  • Makefile 1.7%