The contents of this repository are heavily borrowed from Neurohackademy 2018's session from Dr. Nicholas Cain and Dr. Justin Kiggins.
A full powerpoint presentation can be seen here: http://neurohackademy.org/wp-content/uploads/2018/03/AIBS.pdf
A full recording of the Neurohackademy lecture is here: https://youtu.be/n6rCVRlqT58
Allen SDK: https://github.com/AllenInstitute/AllenSDK
Allen Institute for Brain Science provides a tremendous amount of public online resources:
- Released data is available for public use
- Data analysis and mining are performed after data release
- Approximately 50,000 visits/month from global users (academia, biotech/pharma, nonprofit, government)
The lecture_notes.ipynb notebook is mainly taken from the 2018 neurohackademy session, and is an introduction on how to access Allen Brain Observatory data through the Python API.
cell_detection_slides.pdf is the presentation shared by Dr. Ben Huang.