Code

Bacpop-205 Fix network#53

Code

Open

absternator wants to merge 22 commits intobacpop-186-v9-db-supportbacpop/beebop_py:bacpop-186-v9-db-supportfrom bacpop-205-fix-networkbacpop/beebop_py:bacpop-205-fix-networkCopy head branch name to clipboard

+424-136

Commits

Commits on Dec 2, 2024

• updates for network fix

  absternator

  committed
  e0161cf

Commits on Dec 6, 2024

• Merge branch 'bacpop-186-v9-db-support' of https://github.com/bacpop/beebop_py into bacpop-205-fix-network

  absternator

  committed
  eb5799b

Commits on Dec 9, 2024

• test: small csv from nicj into microreact

  absternator

  committed
  41fca0f

Commits on Dec 16, 2024

• Merge branch 'bacpop-207-csv-microreact' of https://github.com/bacpop/beebop_py into bacpop-205-fix-network

  absternator

  committed
  95482ce

• build: update docker build command to include development image

  absternator

  committed
  26492b7

• refactor: rename cluster retrieval functions for clarity

  absternator

  committed
  11bcc11

• build: update docker push command to include development flag

  absternator

  committed
  3ff71cd

• build: update POPPUNK_VERSION to network_relabelling

  absternator

  committed
  7b5d8fe

Commits on Dec 18, 2024

• refactor: rename add_query_ref_status to create_subgraphs and update logic for subgraph creation

  Show description for 83bcf25
  absternator

  committed
  83bcf25

• ifx merged clusters issues

  absternator

  committed
  02eac4a

Commits on Dec 19, 2024

• Revert "Merge branch 'bacpop-207-csv-microreact' of https://github.com/bacpop/beebop_py into bacpop-205-fix-network"

  Show description for 1f577f8
  absternator

  committed
  1f577f8

• tests: unit tests code

  absternator

  committed
  0850988

• feat: tests fixing

  absternator

  committed
  77c53f6

• fix: update PopPUNK installation branch in CI workflow

  absternator

  committed
  6fe21ef

• fix: improve warning message formatting in replace_merged_component_filenames function

  absternator

  committed
  331a4d4

• docs: enhance docstrings for external cluster functions in utils.py

  absternator

  committed
  64f9665

• fix: tests failig

  absternator

  committed
  54bc4af

• style: format code for better readability in setup.py and test_unit.py

  absternator

  committed
  68eef98

• test: refactor test_replace_filehashes for improved clarity and functionality

  absternator

  committed
  60aba3c

• fix: remove unnecessary --refs option from download_databases script in workflow

  absternator

  committed
  26795ef

• test: clean up whitespace in test_replace_filehashes for improved readability

  absternator

  committed
  54aab40

Commits on Dec 20, 2024

• fix: update download_databases script and refactor database references in tests

  absternator

  committed
  2bf8cab