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making inflammation il2 binding rate variables more readable #740

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making inflammation il2 binding rate variables more readable

making inflammation il2 binding rate variables more readable #740

Triggered via push January 29, 2025 19:57
@allison-li-1016allison-li-1016
pushed 8075ea4
allison/carcade-cell-classes
Status Success
Total duration 28s
Artifacts –

lint.yml

on: push
run-checkstyle-lint
19s
run-checkstyle-lint
update-lint-badges
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50 errors
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L570 <com.puppycrawl.tools.checkstyle.checks.coding.HiddenFieldCheck>: src/arcade/patch/agent/cell/PatchCell.java#L570
'flag' hides a field.
[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L40 <com.puppycrawl.tools.checkstyle.checks.naming.ConstantNameCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L40
Name 'IL2RBGa' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L46 <com.puppycrawl.tools.checkstyle.checks.naming.ConstantNameCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L46
Name 'IL2_IL2RBGa' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L320 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L320
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L323 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L323
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L115 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleProliferation.java#L115
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L58 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleMigration.java#L58
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L148 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/sim/output/PatchOutputSerializer.java#L148
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L48
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L49
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L50
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L51
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L52
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L53
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L54
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L55 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L55
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L60 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L60
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L61 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L61
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L62 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L62
Missing a Javadoc comment.
[checkstyle] src/arcade/core/gui/GUI.java#L374 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>: src/arcade/core/gui/GUI.java#L374
Class XMLFileFilter should be declared as final.
[checkstyle] src/arcade/potts/sim/PottsSeries.java#L215 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/potts/sim/PottsSeries.java#L215
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/potts/vis/PottsVisualization.java#L174 <com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck>: src/arcade/potts/vis/PottsVisualization.java#L174
Method create3DDrawers length is 277 lines (max allowed is 150).
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L41 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L41
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L42 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L42
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L43
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L48
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L49
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L50
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L51
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L52
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L53
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L54
Missing a Javadoc comment.
[checkstyle] test/arcade/patch/agent/cell/PatchCellCARTTest.java#L57 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/cell/PatchCellCARTTest.java#L57
Class 'PatchCellCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
[checkstyle] test/arcade/patch/agent/cell/PatchCellCARTTest.java#L75 <com.puppycrawl.tools.checkstyle.checks.coding.EmptyStatementCheck>: test/arcade/patch/agent/cell/PatchCellCARTTest.java#L75
Empty statement.
[checkstyle] test/arcade/patch/agent/process/PatchProcessInflammationTest.java#L42 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/process/PatchProcessInflammationTest.java#L42
Class 'PatchProcessInflammationTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L28 <com.puppycrawl.tools.checkstyle.checks.naming.TypeNameCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L28
Name 'inflammationMock' must match pattern '^[A-Z][a-zA-Z0-9]*$'.
[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L29 <com.puppycrawl.tools.checkstyle.checks.modifier.RedundantModifierCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L29
Redundant 'public' modifier.
[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L40 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L40
Class 'PatchProcessMetabolismCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessMetabolismCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L1 <com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck>: test/arcade/potts/sim/Potts3DTest.java#L1
File length is 2,371 lines (max allowed is 2,000).
[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L211 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck>: test/arcade/potts/sim/Potts3DTest.java#L211
';' is followed by whitespace.